Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2034 ATGGAACGCACTGCGTCCTTCAACCACACCAATAATACTCTCTCTTCTCAACCAAGTCTCGCTTCAGTTCCCTCCCTCAACTCACCCTCACACCTCTTCAACGCTTCCACCGCCTCTCACACGTGCCTCGCCACTCTCAAACCCCACTCCTCCTCCTACACCTCCTCCCTCACCCTCGCCGGCAAGTTCCTCTACGCAGGTTCCTCCGACAGAGAAATCAGATCCTGGAACTACACTATTTTCCTCTCCGAAGAACACTCACAAAACACCAACATCTTAACGGCGGGAAAAGGTGCTGTGAAATCCATAGTGGTCCACTCCGACAAGCTCTTCACCGCACACCAAGACCATAAAATCCGCGTCTGGAGAATCACCACCCACGACCACGACCACGACCACGACCAGCAGAGGTTCACACGCGTGGCCACTCTCCCCACGCTCGGCGACCGCGTCACCAAAATCTTGCTCCCCAAGAACCACGTTCAGATTCGGCGGCACAAGAAGTGCACCTGGGTTCACCACGTGGACACCGTCTCCTCCCTCGCCTTGTCCCACGACGGAACGCTGTTGTACTCCGTTTCTTGGGACCGCACGATCAAGGTTTGGCGGACGAAAGACTTCGCGTGCTTGGAGTCCATACGCAACGCGCACGACGACGCCATAAACGCCGTGGCAGTTTCTGCAGACGGGCACGTGTACACGGGATCCACAGACAAGAGAATCAGGGTTTGGAGAAAAAAGGAAGGGGAGAAGAAGCACTCGGTGGTGGACACGTTGGAGAAACACAAGTCAGGGATCAACGCTTTGGCTCTTAGCAGTGACGGGTGCGTGTTGTACTCTGGTGCATGTGATAGATCGATACTGGTTTCGGAGCAGGGAGAGAATGGTAAATTGGTGGTGGTTGGTGCTTTGAGGGGGCACACTAAGTCCATTTTGTGCTTGGCTGTGGTTTCGGATTTGGTGTGCAGTGGTTCTGAGGACAAAACGGTGCGTATTTGGAGAGGCCTTCGGAAGGACTATTCCTGCTTAGCTGTTTTGGAAGGACACAGGAGCCCAATTAAGAGCCTAACTGCAACGCTTCATCACACTCATCTCCCTTCCCAACTATCTCTTCTTCTCTACAGTGGCAGTTTGGACAGTGATGTTAAAGTTTGGCAGCTATTTCTTCCTCTTCTTGCAACCTAA 1185 0.5325 MERTASFNHTNNTLSSQPSLASVPSLNSPSHLFNASTASHTCLATLKPHSSSYTSSLTLAGKFLYAGSSDREIRSWNYTIFLSEEHSQNTNILTAGKGAVKSIVVHSDKLFTAHQDHKIRVWRITTHDHDHDHDQQRFTRVATLPTLGDRVTKILLPKNHVQIRRHKKCTWVHHVDTVSSLALSHDGTLLYSVSWDRTIKVWRTKDFACLESIRNAHDDAINAVAVSADGHVYTGSTDKRIRVWRKKEGEKKHSVVDTLEKHKSGINALALSSDGCVLYSGACDRSILVSEQGENGKLVVVGALRGHTKSILCLAVVSDLVCSGSEDKTVRIWRGLRKDYSCLAVLEGHRSPIKSLTATLHHTHLPSQLSLLLYSGSLDSDVKVWQLFLPLLAT* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2034 394 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 394 IPR045182 -
Pvu3g2034 394 SMART WD40_4 39 77 IPR001680 GO:0005515
Pvu3g2034 394 SMART WD40_4 339 386 IPR001680 GO:0005515
Pvu3g2034 394 SMART WD40_4 206 245 IPR001680 GO:0005515
Pvu3g2034 394 SMART WD40_4 164 203 IPR001680 GO:0005515
Pvu3g2034 394 SMART WD40_4 252 291 IPR001680 GO:0005515
Pvu3g2034 394 SMART WD40_4 86 123 IPR001680 GO:0005515
Pvu3g2034 394 SMART WD40_4 297 334 IPR001680 GO:0005515
Pvu3g2034 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 202 - -
Pvu3g2034 394 Gene3D - 25 161 IPR015943 GO:0005515
Pvu3g2034 394 Pfam WD domain, G-beta repeat 172 202 IPR001680 GO:0005515
Pvu3g2034 394 Pfam WD domain, G-beta repeat 302 333 IPR001680 GO:0005515
Pvu3g2034 394 Pfam WD domain, G-beta repeat 210 244 IPR001680 GO:0005515
Pvu3g2034 394 Pfam WD domain, G-beta repeat 341 385 IPR001680 GO:0005515
Pvu3g2034 394 Pfam WD domain, G-beta repeat 257 288 IPR001680 GO:0005515
Pvu3g2034 394 Gene3D - 162 389 IPR015943 GO:0005515
Pvu3g2034 394 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Pvu3g2034 394 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Pvu3g2034 394 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Pvu3g2034 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 254 IPR001680 GO:0005515
Pvu3g2034 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 333 IPR001680 GO:0005515
Pvu3g2034 394 CDD WD40 61 356 - -
Pvu3g2034 394 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 394 - -
Pvu3g2034 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
Pvu3g2034 394 MobiDBLite consensus disorder prediction 1 22 - -
Pvu3g2034 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 333 - -
Pvu3g2034 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 244 - -
Pvu3g2034 394 SUPERFAMILY WD40 repeat-like 39 387 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2034 Pvu-Chr3 40961516 40962961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2034 216 386 Acyl Lipid Metabolism Gene Families AT3G18860 28.492 1.93e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2034 - - gmx:100801906 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2034 3 40961516 40962961 Pvu9g1881 9 26818981 26820837 ECH
Pvu3g2034 3 40961516 40962961 Pvu3g2034 3 40961516 40962961 ECH
Pvu3g2034 3 40961516 40962961 Pvu9g1881 9 26818981 26820837 PCT