Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1848 ATGTCAGGTATTGTTACGAACGAGGTTCGTGATGAAGGGGAAGGTAATGAGATGAATGGGAACCGTGATTCCCCTTCTAAAGAAACCTTGAGTCAGGTTAAGTCCCCCAGGGGTTCCTCGAGTCCGGGAAAAGGTGAAGGCGATACTGCTAATTTTGGTGTTGAGGAGGTGGTTGAGCCCTCCATTGAACAGCTTTATGAGAATGTGTGTGACATGCAGAGTTCGGATCAGTCACCGTCACGGCAAAGTTTTGGATCTGATGGCGATGAGTCTAGAATTGATTCGGAGTTGCGCCATCTAGTTGGAGGACGGATGAGGGAGGTAGAGATAATGGAAGAGGAAGTTGGGGAGGGGAAAGGGCCAGAAAGGAGTTCAAGTAGTGAAATATCTTCTGGATTGGATGGCTTGACCAATGATAAGAAGGTGGATCAGGTGAATGAGATTCAGGAGGTTCAGCCTGCAGCTACTAGTTCTGGTTCCTCAGTAAAATCTGTCAAAGCATCGAGTTCATCACGGGTGGGACCTGATACTTCGCCCAAATCAACAGCCAAGGGAAAAAGTCCTCTCCAAAAACCTCCAATTGAAAAAAAGAATGGTAGGCATTCGAGGAAACAAAGTAGTGGTGGTACTGGCGTGAAGAATTTGAAGAATTCTCCTTTGGGAAATAAGTCAGTGTCACAAAACCGTGTTGAGAAAAGGGCTGAGTCCGTAGTAGAGAGACCTGAGAGGGCACCGTTATTACTAAAACAAGCAAGAGATATGATTTCCTTCGGGGATAATCCGCATAAGGCTCTTGACTTGGCTCTTCAAGCAATGCAACTGTTTGAGAAATTAGGTGATGGGAAACCGAGTTTGGAGCTGGTTATGTGTCTACATGTTATAGCAGCAATATATTGTAGCTTGGGTCAATATGGTGAGGCAATTCCAATTCTTGAGCGTTCAATTGAGATTCCTGTTATTGAGGAAAGTCAACAACATGCCCTTGCTAAATTTGCTGGTCACATGCAACTCGGAGACACTTATGCTATGCTGGGCCAGCTTGAGAATTCAATTACGTGCTATAACACTGGATTAGAACTCCAGAAGCAGGTTTTGGGAGAGACAGACCCAAGGGTTGGTGAAACTTGTCGGTACGTGGCTGAAGCTAATGTTCAGGCTTTACAATTTGATGAAGCAGAGAAGCTTTGTCAGATGGCTCTAGACATTCACAAAACAAATAATTCAGCCCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTGTATGTGATACAAAGGGAAATCACGAATCTGCTCTTGAGCATCTTGTTCTAGCCAGCATGGCAATGGTAGCTAACGGCCAGGAAGGGGATGTGGCTTCTGTTGACTGCAGCATTGGAGACACATACTTGTCTTTGTCCCGATATGATGAAGCTGTTTTTGCATATCAGAAAGCATTAACAGCTTTCAAGACCAACAAAGGAGAGAATCATCCAGCAGTGGGATTTGTCTTTGTACGTTTGGCTGATTTGTATAACAGGATAGGGAAGATAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAAAATATATGAGAATCCAATTCCTGGAGTTCCTCTAGAGGAGATTGCTAGTGGTCTTACAAATATTTCAACTATCTATGAGTCTATGAATGAGCTTGAGCAGGCACTCAAGTTACTGCAGAAAGCACTGGAGATATACAATGATGTCCCTGGTCAGCAAAGTACAATAGCTGGAATTGAAGCCCAGATGGGAGTCATGTACTACATGTTGGGGAAGTATTCTGAATCTTACGAAACTTTGAAGACCGCTATTTCAAAGCTTCGTGCTATTGGAGAAAAGAAATCATCTTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGCGGTATGCCTTAAGTGAGGCTACAGAATTATTTGAAGAAGCAAAGAGTATTTTGGAAAAAGAATATGGTCCGTATCACCCAGAAACACTTGGGGTATGTAGTAATCTTGCTGGCACATACGATGCAATTGGCAGGCTGGATGATGCAATTCAAATTCTGGAGTACGTTGTTAGCACGAGAGAGGAAAAGCTGGGGACAGCAAATCCTGAAGTGGATGATGAGAAGAAAAGGTTGGGTGAGTTGTTGAAGGAAGCAGGTAGAGTTCGGAGCAGAAAAACCAGATCACTCGAGAACCTTCTTGATGGCAATGCTCACACTGTAAACAATGTTGTCATCAGGGCCTGA 2250 0.4396 MSGIVTNEVRDEGEGNEMNGNRDSPSKETLSQVKSPRGSSSPGKGEGDTANFGVEEVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEGKGPERSSSSEISSGLDGLTNDKKVDQVNEIQEVQPAATSSGSSVKSVKASSSSRVGPDTSPKSTAKGKSPLQKPPIEKKNGRHSRKQSSGGTGVKNLKNSPLGNKSVSQNRVEKRAESVVERPERAPLLLKQARDMISFGDNPHKALDLALQAMQLFEKLGDGKPSLELVMCLHVIAAIYCSLGQYGEAIPILERSIEIPVIEESQQHALAKFAGHMQLGDTYAMLGQLENSITCYNTGLELQKQVLGETDPRVGETCRYVAEANVQALQFDEAEKLCQMALDIHKTNNSAPSLEEAADRRLMGLVCDTKGNHESALEHLVLASMAMVANGQEGDVASVDCSIGDTYLSLSRYDEAVFAYQKALTAFKTNKGENHPAVGFVFVRLADLYNRIGKIRESKSYCESALKIYENPIPGVPLEEIASGLTNISTIYESMNELEQALKLLQKALEIYNDVPGQQSTIAGIEAQMGVMYYMLGKYSESYETLKTAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEKEYGPYHPETLGVCSNLAGTYDAIGRLDDAIQILEYVVSTREEKLGTANPEVDDEKKRLGELLKEAGRVRSRKTRSLENLLDGNAHTVNNVVIRA* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1848 749 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 738 - -
Pvu9g1848 749 MobiDBLite consensus disorder prediction 149 185 - -
Pvu9g1848 749 MobiDBLite consensus disorder prediction 204 227 - -
Pvu9g1848 749 ProSiteProfiles TPR repeat profile. 540 573 IPR019734 GO:0005515
Pvu9g1848 749 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 738 - -
Pvu9g1848 749 SUPERFAMILY TPR-like 268 701 IPR011990 GO:0005515
Pvu9g1848 749 MobiDBLite consensus disorder prediction 1 240 - -
Pvu9g1848 749 Pfam Tetratricopeptide repeat 335 363 IPR019734 GO:0005515
Pvu9g1848 749 Pfam Tetratricopeptide repeat 624 689 - -
Pvu9g1848 749 Pfam Tetratricopeptide repeat 260 317 - -
Pvu9g1848 749 Gene3D Tetratricopeptide repeat domain 654 736 IPR011990 GO:0005515
Pvu9g1848 749 ProSiteProfiles TPR repeat profile. 455 488 IPR019734 GO:0005515
Pvu9g1848 749 Pfam MalT-like TPR region 386 570 IPR041617 -
Pvu9g1848 749 MobiDBLite consensus disorder prediction 87 121 - -
Pvu9g1848 749 Gene3D Tetratricopeptide repeat domain 441 623 IPR011990 GO:0005515
Pvu9g1848 749 MobiDBLite consensus disorder prediction 67 86 - -
Pvu9g1848 749 Coils Coil 546 573 - -
Pvu9g1848 749 Gene3D Tetratricopeptide repeat domain 331 440 IPR011990 GO:0005515
Pvu9g1848 749 Gene3D Tetratricopeptide repeat domain 246 330 IPR011990 GO:0005515
Pvu9g1848 749 MobiDBLite consensus disorder prediction 19 46 - -
Pvu9g1848 749 SMART tpr_5 331 364 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 455 488 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 288 321 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 373 406 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 665 698 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 540 573 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 497 530 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 581 614 IPR019734 GO:0005515
Pvu9g1848 749 SMART tpr_5 623 656 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1848 Pvu-Chr9 26247950 26252337 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1848 - - gmx:100783201 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2066 3 41325333 41328635 Pvu9g1848 9 26247950 26252337 ECH
Pvu9g1848 9 26247950 26252337 Pvu9g1848 9 26247950 26252337 ECH
Pvu3g2066 3 41325333 41328635 Pvu9g1848 9 26247950 26252337 PCT