Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1813 ATGTTATTTGTCTCTGCAACACTCCAAAACGAACCCATGAAGGCAACTCTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAACTCCACCGCTGAACAAGTCACTGAAGATTCTTCTTGCTTCCTTTCTTCACCTCTAACCGCTCTCATCACTGGAGCAAGTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTGGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCAAGGGACTTGAAGAAGGCCAGGGAAGTGAAAAGGAACATACAAAAGGAGAGTCCAAAGGCTGAGGTTGTTCTGTTGGAGATTGATCTTAGCTCTTTTGGTTCTGTACAGAGATTTTGTTCCGAGTTCTTAGCTTTAGAACTTCCCCTTAATATTCTCATAAACAACGCAGGGATATTTTGTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGACCACATTTGCTACAAATTACTTAGGTCATTTTTTGTTAACAGAAATCTTACTAGACAAAATGATAGAGACGGCAGAGAAGACAGGTATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAAAGATGGTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCCAAGGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAGGGTTTACTAACGGATTCCCTATTTTTTATCGCATCAAAGTTACTCAAAACAACATCACAGGGAGCAGCAACAACGTGTTATGTTGCTCTGAGCTCAAAAACAGAAGTGATAAGTGGAAAATACTTTGCAGATTGTAACGAGAGTAAATGCTCGAGCCTAGCAAATGACGAGTCGGAAGCACAAAAGCTATGGAACAACACCCATGCCTTGCTTCTGAAACGACTACGTCAAGCAACAATTTGA 1029 0.4082 MLFVSATLQNEPMKATLRYLAGMAGPSGFGSNSTAEQVTEDSSCFLSSPLTALITGASSGIGAETARVLAKRGVRVVIAARDLKKAREVKRNIQKESPKAEVVLLEIDLSSFGSVQRFCSEFLALELPLNILINNAGIFCQNLEFSEDKIETTFATNYLGHFLLTEILLDKMIETAEKTGIQGRIINVSSVIHSWVKKDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAVHPGIVKTGIIRAHKGLLTDSLFFIASKLLKTTSQGAATTCYVALSSKTEVISGKYFADCNESKCSSLANDESEAQKLWNNTHALLLKRLRQATI* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1813 342 PANTHER RETINOL DEHYDROGENASE 16 336 - -
Pvu9g1813 342 PRINTS Glucose/ribitol dehydrogenase family signature 51 68 IPR002347 -
Pvu9g1813 342 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Pvu9g1813 342 PRINTS Glucose/ribitol dehydrogenase family signature 177 193 IPR002347 -
Pvu9g1813 342 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Pvu9g1813 342 PRINTS Glucose/ribitol dehydrogenase family signature 241 258 IPR002347 -
Pvu9g1813 342 Pfam short chain dehydrogenase 51 192 IPR002347 -
Pvu9g1813 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 IPR002347 -
Pvu9g1813 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 191 IPR002347 -
Pvu9g1813 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Pvu9g1813 342 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 16 336 - -
Pvu9g1813 342 Gene3D - 41 337 - -
Pvu9g1813 342 CDD retinol-DH_like_SDR_c_like 51 326 - -
Pvu9g1813 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 51 310 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1813 Pvu-Chr9 25614601 25618106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1813 53 306 Acyl Lipid Metabolism Gene Families AT3G55290 29.323 3.51e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1813 - - gmx:100801384 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1813 9 25614601 25618106 Pvu9g1813 9 25614601 25618106 ECH
Pvu3g2099 3 41728042 41730570 Pvu9g1813 9 25614601 25618106 PCT