Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2099 ATGAAGGCAACACTACGGTACTTAGCAGGCATTGCTGGCCCAAGTGGTTTCGGCTCAAATTCAACAGCTGAGCAAGTTACTGAAGATTTCTCTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGTGCGACTTCTGGAATTGGAGCTGAAACAGCTAGAGTGTTTGCAAAAAGAGGTGTAAGGGTTGTGATTGGTGCGAGGGACTTAAGAAAGGCGAGGGAAGTGAGAGAGAGAATCCAAAAGGAGAGTCCTAATGCTGAGGTTATTCTGTTGGAGATCGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGCTCAGAGTTTTTAGCTTTAGAATTGCCCCTTAATATTCTCATAAACAATGCAGGAATGTACTCTCAAAACTTGGAGTTCTCTGAAGAGAAACTTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACGAAAATGCTGATAGAGAAAATGATAGATACTGCAAAGAAGTCAGGGATTGAAGGAAGAATAATAAACGTTTCTTCTGTGCTTCACAGCTGGGTGAAAAGATCAGCGTTTTGTTTCAACGACATGCTCTGCGGAAAAAATTATAATGGCACACGCGCATACGCTCAGTCAAAATTGGCAACAATTCTGCATGTCAAGGAAGTGGCAAGACAACTTAAGGAAAGGAATGCAAATGTAACAATTAACGCAGTGCATCCAGGAATTGTGAAGACGGGAATTATTAGAGCACATAAGGGCTTAATAACGGATTCCCTGTTTTTCATTGCATCGAAGTTACTGAAATCGATATCACAGGGAGCATCAACGACGTGTTATGTTGCGCTGAGTGGAAAAACAGAAGGAGTGAGTGGAAAATATTTTACAGATTGTAACGAGAGTAACTGCTCAAGTCTAGGAAACGAGGAATCAGAAGCAAAAAAGCTATGGAATGATACCTGCGCATTGCTTCACAAACGGTTACGTCAAGCAACAAATTGA 993 0.4089 MKATLRYLAGIAGPSGFGSNSTAEQVTEDFSSLLPSNLTALITGATSGIGAETARVFAKRGVRVVIGARDLRKAREVRERIQKESPNAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKLEMTFATNYLGHFLLTKMLIEKMIDTAKKSGIEGRIINVSSVLHSWVKRSAFCFNDMLCGKNYNGTRAYAQSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCNESNCSSLGNEESEAKKLWNDTCALLHKRLRQATN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2099 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Pvu3g2099 330 Coils Coil 325 330 - -
Pvu3g2099 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Pvu3g2099 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Pvu3g2099 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Pvu3g2099 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Pvu3g2099 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Pvu3g2099 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Pvu3g2099 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Pvu3g2099 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Pvu3g2099 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Pvu3g2099 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Pvu3g2099 330 Gene3D - 35 326 - -
Pvu3g2099 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Pvu3g2099 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2099 Pvu-Chr3 41728042 41730570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2099 19 248 Acyl Lipid Metabolism Gene Families AT1G63380 27.731 1.30e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2099 - - gmx:100776567 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2099 3 41728042 41730570 Pvu3g2099 3 41728042 41730570 ECH
Pvu3g2099 3 41728042 41730570 Pvu9g1813 9 25614601 25618106 PCT