Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1807 ATGGCGAGAGGGGAGAGAGCAGAGACGGAGAGTGGGGCATCGTTGCCGTCGGTGGGTACGGACGCCAAGAAGCGGAGAGTGACGTATTTCTACGAACCCTGCATCGGCGACTACTACTACGGTCAAGGACACCCAATGAAGCCACACCGCATTCGCATGGCCCACAATCTCATCGTGCACTACGGTCTCCACCGCCGAATGCAGGTCAACCGTCCCTTTCCCGCGGCGGAGGCGGACATCGGCCGCTTCCACTCCGACGACTACGTCGAGTTCCTGTCCTCCGTTTCGCCGCAAATCCTATCTGAGAACTCCCACTCCCACTACCGCCAGCTCAAGCGCTTCAACGTCGGGGAGGATTGCCCAGTCTTCGACGGCCTCTTCGACTTCTGTCGCGCTTCCGCCGGCGGCTCCATCGGCGCCGCCGTACGCCTCAACCGCGCCGACGCCGACATCGCTATCAACTGGGCCGGCGGCCTGCACCACGCCAAGAAGGCAGAGGCGTCCGGCTTCTGCTACGTCAACGACATTGTTCTCGGCATTCTTGAACTTCTCAAAGTTCATAGGCGTGTGCTGTATATTGATATTGATGTTCACCATGGAGATGGGGTCGAGGAGGCATTTTACACTACTGATAGGGTCATGACAGTGTCATTTCACAAGTTTGGGGATTTTTTCCCTGGAACTGGGCACATGAAAGACACTGGGGTGGGTGCTGGAAAGAATTATTCTCTAAATGTCCCACTCAATGATGGATTGGATGATGAGACTTTCCGGGGTCTGTTTCGCCCCATCATTCAGAAAGTCATGGATGTTTATCAACCGGATGCAGTTGTTCTTCAGTGTGGTGCTGACTCCTTGTCTGGTGACCGGTTGGGTTGCTTCAACTTGACTGTGAAGGGTCATGCAGATTGCCTTCGTTTCCTTAGATCATTCAATGTTCCTCTAATGGTATTGGGTGGGGGAGGATATACAGTTCGGAATGTTGCTCGTTGTTGGTGTTATGAGACTGCAGTGGCAGTAGGAGTGGAGCCTAATCCGAAGTTGCCTTACAATGAATATTATGAATATTTTGGTCCAGACTACACTCTTCATCTCGAGCCATCCAACATGGAAAACCTAAACTCACCCAGGGATCTGGAAAAAATTCGAAATGCATTACTGGAACAACTTTCCAGGCTTCCCCATGCACCCAGTGTACCTTTTCAAACAACACCATCAATCATACAAGCTCCTGAAGAGGAAGAGGAGCACATGGATATCAGATCAAAACGTCCCATATGGAGTGGTGAAGATTTTGATTCTGACAACGATGATGACATGGCTAGTTCAAAGAATTCTGTTTTAACTGCCCAAACGAGCAGCAGGTGTGGTGCAGATGTGATGGACGAAGATTAG 1395 0.514 MARGERAETESGASLPSVGTDAKKRRVTYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMQVNRPFPAAEADIGRFHSDDYVEFLSSVSPQILSENSHSHYRQLKRFNVGEDCPVFDGLFDFCRASAGGSIGAAVRLNRADADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHMKDTGVGAGKNYSLNVPLNDGLDDETFRGLFRPIIQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPNPKLPYNEYYEYFGPDYTLHLEPSNMENLNSPRDLEKIRNALLEQLSRLPHAPSVPFQTTPSIIQAPEEEEEHMDIRSKRPIWSGEDFDSDNDDDMASSKNSVLTAQTSSRCGADVMDED* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1807 464 MobiDBLite consensus disorder prediction 410 431 - -
Pvu9g1807 464 PANTHER HISTONE DEACETYLASE 11 444 - -
Pvu9g1807 464 Gene3D Histone deacetylase domain 16 405 IPR037138 -
Pvu9g1807 464 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Pvu9g1807 464 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Pvu9g1807 464 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Pvu9g1807 464 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 PRINTS Histone deacetylase signature 79 97 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 PRINTS Histone deacetylase signature 235 248 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 PRINTS Histone deacetylase signature 252 270 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 CDD HDAC_classI 30 339 - -
Pvu9g1807 464 PIRSF HDAC_I_euk 8 462 IPR003084 GO:0004407|GO:0016575
Pvu9g1807 464 Pfam Histone deacetylase domain 44 337 IPR023801 -
Pvu9g1807 464 SUPERFAMILY Arginase/deacetylase 25 392 IPR023696 -
Pvu9g1807 464 MobiDBLite consensus disorder prediction 410 464 - -
Pvu9g1807 464 MobiDBLite consensus disorder prediction 441 456 - -
Pvu9g1807 464 PANTHER HISTONE DEACETYLASE 6 11 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1807 Pvu-Chr9 25494615 25499666 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1807 K06067 - gmx:100801159 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1807 9 25494615 25499666 Pvu9g1807 9 25494615 25499666 ECH
Pvu3g2104 3 41811245 41814434 Pvu9g1807 9 25494615 25499666 PCT