Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2104 ATGGGTATGATGGAAGAGGAGAGTAGCAATAGCAACATAGAAGGTGGGGCTTCGCTGCCATCGTCAGGTTCCGACGCCAAAAAGCGAAGAGTCACGTACTTTTACGAACCAACTATCGGCGATTACTACTACGGCCAGGGCCACCCAATGAAGCCGCACCGCATCCGCATGGCGCACAATCTTATCGTCCACTACTCCCTCCACCGCCGCATGGAGATTAACCGCCCTTTCCCGGCCTCCACCGCCGACATTCGCCGCTTTCACTCCGACGACTACGTCCACTTCCTCTCTTCCGTCTCCCCCGAGACCCTTTCGGACATCACCTTCTCGCGCCAACTCAAACGCTTCAACGTCGGCGAGGACTGCCCTGTCTTCGACGGCCTCTTCGACTTCTGCCAAGCTTCCGCTGGAGGGTCCATCGGCGCCGCCGTCAAACTCAACCGCGGTGACGCTGACATCGCCATCAATTGGGCCGGCGGCCTCCACCACGCCAAGAAGTCCGAAGCCTCTGGATTCTGTTACGTCAACGACATTGTTCTTGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGAGTTCTGTATGTTGACATTGATGTTCACCATGGTGATGGAGTTGAGGAGGCCTTTTACACCACTGATAGAGTAATGACAGTCTCTTTTCACAAGTTTGGGGACTTTTTCCCTGGCACAGGGCATATCAAAGACATTGGGGTGGGCTCGGGAAAGAATTATGCGGTCAATGTCCCATTAAACGACGGAATGGATGATGAGAATTTTCGTGGTCTGTTTCGACCTATCATTCATAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCATGCAGATTGCCTTCGATTCCTTAGATCTTTCAATGTTCCTTTAATGGTTTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGACAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGTCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATAAGGATCACACTACTAGAACAGATATCCCGTCTTCCCCATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTAGAAATTCCAGAAGAGGCTGAAGAGGACATGGATAGAAGACCAAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGACCCTGATGAAGGTGGAAAGGCTAATTCCAAGTTCTCAAATGTCAATGCCCATATGAGGGAAATTGTAGATGACATGGAAGAAGAGAAGCCAGGAGTGCATCCACCGTCTTGTTGTTGA 1428 0.4895 MGMMEEESSNSNIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASTADIRRFHSDDYVHFLSSVSPETLSDITFSRQLKRFNVGEDCPVFDGLFDFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYAVNVPLNDGMDDENFRGLFRPIIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRITLLEQISRLPHAPSVPFQTTPPTLEIPEEAEEDMDRRPKLRKWDGEDYDSDPDEGGKANSKFSNVNAHMREIVDDMEEEKPGVHPPSCC* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2104 475 SUPERFAMILY Arginase/deacetylase 29 393 IPR023696 -
Pvu3g2104 475 MobiDBLite consensus disorder prediction 1 25 - -
Pvu3g2104 475 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Pvu3g2104 475 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Pvu3g2104 475 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Pvu3g2104 475 Pfam Histone deacetylase domain 48 339 IPR023801 -
Pvu3g2104 475 PANTHER HISTONE DEACETYLASE 6 15 445 - -
Pvu3g2104 475 CDD HDAC_classI 34 341 - -
Pvu3g2104 475 MobiDBLite consensus disorder prediction 1 19 - -
Pvu3g2104 475 MobiDBLite consensus disorder prediction 416 442 - -
Pvu3g2104 475 Gene3D Histone deacetylase domain 27 402 IPR037138 -
Pvu3g2104 475 PANTHER HISTONE DEACETYLASE 15 445 - -
Pvu3g2104 475 MobiDBLite consensus disorder prediction 397 451 - -
Pvu3g2104 475 PIRSF HDAC_I_euk 10 470 IPR003084 GO:0004407|GO:0016575
Pvu3g2104 475 PRINTS Histone deacetylase signature 50 67 IPR003084 GO:0004407|GO:0016575
Pvu3g2104 475 PRINTS Histone deacetylase signature 83 101 IPR003084 GO:0004407|GO:0016575
Pvu3g2104 475 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Pvu3g2104 475 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Pvu3g2104 475 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Pvu3g2104 475 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Pvu3g2104 475 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2104 Pvu-Chr3 41811245 41814434 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2104 K06067 - gmx:100807923 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2104 3 41811245 41814434 Pvu3g2104 3 41811245 41814434 ECH
Pvu3g2104 3 41811245 41814434 Pvu9g1807 9 25494615 25499666 PCT