Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1800 ATGGATCCCAACCCTGGAACCTTTCCCCTCCTCTCCTACGTCATGTCGCGCCTTCCTTCCCTCACTCCCAGACCAGCCGCCGCCGCCCCCGCGAACTCTGACTCCGACCAATTCGACATCGAGCAGCCGCGCGCCCCGGAGATCCTGGGGCAAATGCCGCACCTCGCCGACCCGGACCTCATGGCCTCCATGGGCCGGGCCGTATCCCAGGTGGCCCAGGCCCGAACGGTCCTGAACCTGATCGGGGAGCGGCCCACGCACGAGGAAGTCGACAGCGCCAGGGCCAGGCTCGCGGAGTTCGAGGCCCAGCTGTCCCACGACCTGGAGGAGATTGTGCTCCGGGCCCGGCCCGCGGAGATGGAGATTCACGGGTGGCGGGCCCAGCAGGCCGAGAAGGAGAGGGAGTGCCGGGAGCTGGCGGAGACGGAGAAGCGAATCTGGAAGTCGGTGGTGCAGCTGGACGAGATGCACGAGGCCTACGAGAAGCTTCTGAAGGAGGCGGAGAAGCGGTTGGTGAAAATGTACGAGATGAAGGAAGATGGTGATGGGGATGTTGTTGGCGAGGAAGTGAACGAAGAGGTTGTGGGAATTCTTCAAGAGGCCTATGGTAAGGGAATGGAACGCGTCAATCTTTCTGGACGCCAATTGAAGCTCTTGCCTGAAGCATTTGGTCGCATTCCTGGCTTGCTCCTGCTTGATCTTTCTGCCAATCAACTCTCCGCTATTTCTGATTCAATAGCTGGACTGCAAAACCTTGTGGAGCTTAATCTGTCTTCAAATCTTTTGGAGTCTCTGCCTGATTCAATTGGGTTATTACAAAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATCCCATCTGTCACTGCAGGTCATTGGTTGAGTTGGATGTGAGCTTTAACAATCTATCATATTTGCCAACAAACATTGGATATGAATTGCCGAACTTGCAGAAACTCATTATTCAGTTGAACAAGATTCGGTCTCTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCGCTATTTGGATGCTCACTTCAATGAGCTACATGGGCTTCCTATTGCAATCGGGAGACTGACTAATCTGGAGGTTCTCAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTACCAGAGACATTTGGTGATTTGACTAGCCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCACTTCCTGATACATTTGGGCGCCTTGATAATTTGACCAAGCTAAACTTGGAGCAGAATCCTCTTCAATTGCCACCAATGGAGATTGTAAATCAAGGGGTTGAAGCCGTAAAGACCTTTATGGCCAAGAGGTGGCTTGATATATTGTTGGAGGAGGAGAGCAAAAGCAGCCAAGAAATGCAAGAACTAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGCTTCTGGAAATGTAATTGGGTATATTGGAACTGCCGTTGGAACTCCTATGTCGCCCAAATCTCCCAGAGACGCATATCTTGATCAGCAGCTATGA 1542 0.5188 MDPNPGTFPLLSYVMSRLPSLTPRPAAAAPANSDSDQFDIEQPRAPEILGQMPHLADPDLMASMGRAVSQVAQARTVLNLIGERPTHEEVDSARARLAEFEAQLSHDLEEIVLRARPAEMEIHGWRAQQAEKERECRELAETEKRIWKSVVQLDEMHEAYEKLLKEAEKRLVKMYEMKEDGDGDVVGEEVNEEVVGILQEAYGKGMERVNLSGRQLKLLPEAFGRIPGLLLLDLSANQLSAISDSIAGLQNLVELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDPICHCRSLVELDVSFNNLSYLPTNIGYELPNLQKLIIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTSLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLQLPPMEIVNQGVEAVKTFMAKRWLDILLEEESKSSQEMQELEQGGWLTRSTSWLKNASGNVIGYIGTAVGTPMSPKSPRDAYLDQQL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1800 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 494 - -
Pvu9g1800 513 SMART LRR_bac_2 390 409 - -
Pvu9g1800 513 SMART LRR_bac_2 342 361 - -
Pvu9g1800 513 SMART LRR_bac_2 272 291 - -
Pvu9g1800 513 SMART LRR_bac_2 319 338 - -
Pvu9g1800 513 SMART LRR_bac_2 226 245 - -
Pvu9g1800 513 SMART LRR_bac_2 249 268 - -
Pvu9g1800 513 SMART LRR_bac_2 365 386 - -
Pvu9g1800 513 SMART LRR_bac_2 295 314 - -
Pvu9g1800 513 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Pvu9g1800 513 SMART LRR_typ_2 296 318 IPR003591 -
Pvu9g1800 513 SMART LRR_typ_2 226 248 IPR003591 -
Pvu9g1800 513 SMART LRR_typ_2 249 271 IPR003591 -
Pvu9g1800 513 SMART LRR_typ_2 390 412 IPR003591 -
Pvu9g1800 513 SMART LRR_typ_2 272 295 IPR003591 -
Pvu9g1800 513 SMART LRR_typ_2 365 389 IPR003591 -
Pvu9g1800 513 SMART LRR_typ_2 413 436 IPR003591 -
Pvu9g1800 513 SMART LRR_typ_2 319 342 IPR003591 -
Pvu9g1800 513 Coils Coil 150 177 - -
Pvu9g1800 513 Coils Coil 450 470 - -
Pvu9g1800 513 PRINTS Leucine-rich repeat signature 229 242 - -
Pvu9g1800 513 PRINTS Leucine-rich repeat signature 390 403 - -
Pvu9g1800 513 SUPERFAMILY L domain-like 204 431 - -
Pvu9g1800 513 ProSiteProfiles Leucine-rich repeat profile. 392 413 IPR001611 GO:0005515
Pvu9g1800 513 Pfam Leucine rich repeat 217 262 IPR001611 GO:0005515
Pvu9g1800 513 Pfam Leucine rich repeat 367 426 IPR001611 GO:0005515
Pvu9g1800 513 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Pvu9g1800 513 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 494 - -
Pvu9g1800 513 Gene3D Ribonuclease Inhibitor 334 446 IPR032675 -
Pvu9g1800 513 Coils Coil 90 110 - -
Pvu9g1800 513 Gene3D Ribonuclease Inhibitor 102 333 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1800 Pvu-Chr9 25326451 25329523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1800 169 427 Receptor kinase-like Gene Family AT5G25910 32.155 1.17e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1800 - - gmx:100803823 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1800 9 25326451 25329523 Pvu9g1800 9 25326451 25329523 ECH
Pvu3g2113 3 41958638 41961141 Pvu9g1800 9 25326451 25329523 PCT