Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1723 ATGAATAATCAAGCAAAGAATGTGGCTGCATCTTCTTTGTTTGGTCATTCTGGAATGGCCACACAACCACACCACCCTAACCCCATTCAGCAATGGAACCCTTCAATTCCAACCCCTTTACACTCTCAATCACAATCACAGTCTCAGCCACGTCCTCAGACACAATTCCCTGGTCTCTTTCAGTTTTCAGAGCCCCAATCTCATGTTCTTGCACAAGCTCAGTATGCACAGACACAATTGCAGTCTCAGGCTGCACGAGCTCATCCACAACCTCAAACTCACCCTTTTACCCACTTGCATAGTGTAAATACTAATGCTGCTAATGGCACATCATCCCCGGCCACCGGAAATGCCAAGCGACCAACCCCGAAGCCCCTGTTGAGGACTCATAATTCATCCAATATGAACCAATCCATGCCGGGTGCTCGGCAGCAAAAGAAGCAATCACCAGAGAAGGGGGCTATGTTTTTGCCTGAGTCGGCTCTGTATACTCAATTACTTGATTTTGAGGCTCAGGTGGATACTGCTTTGGCCAGGAGAAAGTTTGATATACAGGAGGCTAGGCTCCTTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTGTTCAATACCTTCTCAAATCATGCCAAAATGGATTCTGAGCATAAGAAGGCCAATGAATCTTCTTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTATGGATTCCATGTCTGGAATTTCACAGAGATCGAGCCCTCCGAACCCAAAGTTCTCTGCATTTTTCAAGAAAATTACCATACATTTGGATCAAAGCATTTATCCTGATAATCATGTCATTGTATGGGATAGTGCTCGTTCACCTACCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAGTTTACTGCAGTGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCATCACAACTGTCTAAACTCTTAGGTATTGAGGTTGAGACTCGTCCAAGAATAATAGCTTCTCTTTTTAACTACGTGAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCGTCTTTCATATGTGATCCTTCTCTACAAAGGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTTTCAGAAGTTAGCACAGCATTTGTCACAGCCACAACCAATCCATCTGGAGCATAACATCAAGCTTTCTGAATATGCTCCAGCTGTAACTGCATGTTATGATATACAGGTGGATGTGCCTTTTCCATTGGAAAAAGACAAGTCTACATTCTTGTCAAGCCTTGAGAGCCAAAAGGAGATTGAAGCTTATGATGAGGCTATTTGTGTTTCCTTAAAGAAGATCCAAGAGCATCGGAGAAGACGGGCTTTTTTTCTTAGTTTTAGTCAGTCTCCAGTAGAGTTTATTGATACTTTGATTACTTCTCAAAGCAAGGATTTGAAACTTGTTGCTGGAGATGCCAGGCATAACGTTGAAAAGGAACTTCGATCTGAATTCTACAATCAACCATGGGTCGAGGATGCTGCCATTCGTTACTTGAACCGCAAAAATGCAGGAATTGATGTTATTGGACGCAACTAA 1587 0.4279 MNNQAKNVAASSLFGHSGMATQPHHPNPIQQWNPSIPTPLHSQSQSQSQPRPQTQFPGLFQFSEPQSHVLAQAQYAQTQLQSQAARAHPQPQTHPFTHLHSVNTNAANGTSSPATGNAKRPTPKPLLRTHNSSNMNQSMPGARQQKKQSPEKGAMFLPESALYTQLLDFEAQVDTALARRKFDIQEARLLPHVQKTLRVYVFNTFSNHAKMDSEHKKANESSWSLKITGRILEDGMDSMSGISQRSSPPNPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNDPSSFICDPSLQRVFGEEKMDFTMVFQKLAQHLSQPQPIHLEHNIKLSEYAPAVTACYDIQVDVPFPLEKDKSTFLSSLESQKEIEAYDEAICVSLKKIQEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDARHNVEKELRSEFYNQPWVEDAAIRYLNRKNAGIDVIGRN* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1723 528 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 91 525 - -
Pvu9g1723 528 CDD SWIB_like 316 384 - -
Pvu9g1723 528 SUPERFAMILY SWIB/MDM2 domain 305 394 IPR036885 -
Pvu9g1723 528 Pfam SWIB/MDM2 domain 313 384 IPR003121 -
Pvu9g1723 528 MobiDBLite consensus disorder prediction 16 59 - -
Pvu9g1723 528 ProSiteProfiles SWIB/MDM2 domain profile. 309 386 IPR003121 -
Pvu9g1723 528 MobiDBLite consensus disorder prediction 80 118 - -
Pvu9g1723 528 SMART swib_2 310 389 IPR019835 -
Pvu9g1723 528 MobiDBLite consensus disorder prediction 126 145 - -
Pvu9g1723 528 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 91 525 - -
Pvu9g1723 528 MobiDBLite consensus disorder prediction 80 151 - -
Pvu9g1723 528 Gene3D SWIB/MDM2 domain 306 391 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1723 Pvu-Chr9 24358352 24364039 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu9g1723 SWIB 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1723 K11650 - gmx:100784907 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2171 3 42550392 42554084 Pvu9g1723 9 24358352 24364039 ECH
Pvu9g1723 9 24358352 24364039 Pvu9g1723 9 24358352 24364039 ECH
Pvu3g2171 3 42550392 42554084 Pvu9g1723 9 24358352 24364039 PCT