Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2171 ATGAACAACAACATCAACAATCCAGCAAAAAATGCTGCAACGCCGTCGTTTTTCGCCAACCCGGGTGCACCCACGATCCCCATGAACCACCCATCACCACACCTTCTCTCACAGGCGCAGCCTCAACCACAAGCTGGTGCCTCTCACTTCCATGGCCACTTTCAGCTCTCGCAACCCCAAACACACGTCCTCGCACAGCCACACCCTATTCCTCACCCGCAGGTGCACAACAATTCTAACACCAATGCCAACGTTGCAACCCCTGCGCCTCCCAAGCGTGCAAATCACAAACCCCCTTCACGCCCTCCCGGTTCCTCCAACGCCACTCAGTCCTCTGCCTTCAAGACCATGGAACTTACCCTGGCGCCTCCTCGAAAAAAGAGAAGCTTTCCCGAGAAGCTCATTCCCGACAAGGTGGCCAAGCTTGTGCCTGAGTCTGCTATTTATGCAAAGTTGCTTGAACTTGAGACCCACATAGATTCTGTTTTGGTTAGGAAGAAAATTGATGTGCAGGAGAATGTTAGAAGCCCTCGCTGTGTTAGGAGGACGCTAAGGATTTATGTGTATAATACTTTTTCGAAACAGGTGAAAGTGGAACCTGGGAAGATTGATGTGGAGGAGCTTTCTTGGGTTCTCAGGATAACAGGAAGGATGTTGGAAGATGGTAAGGATCCAGTGGCAGATGGAGTTTTGCCTAAGGAAAATCCAAAATTCTCGGCTTTCTTCAAGAAGATTACCATTTACTTGGATCAGGGTTTCTATCCGGATAACCATGTTGTTGTGTGGGATAGTGCCCGTTCGGCTGCGCAGCGGGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACTGCGGTTGTTAGAATGTCAATGAATCATTCGCCTGACAAGTTTGTGGTTTCAGCTCAGCTGGCTAGAGTGTTAGGGGTTGAGTTTGACTCGCGCTCTAGGATCATTGCTGCTCTTTGGCATTATGTGAAGGCTAAGAAGCTGCAGAGTCCGAATGATCCTTCTTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTTTCTGTGGCTTCGCAGAAGATATCACAGCATTTGTCACCTCCGCAGCCTATACACCTGGAGCATAAAATCAAGCTTTCGGGAAATTGTCCAGCCGGAGCTACGTGTTATGATGTGCAGGTTGATGTGCCTCTTCCACTAGAGAAGGATATGTCTTCATTCTTGGCAAGCACTGAGAAGCACAAAGAGATTGATGTTTTTGATAAACTGATCTGTGATTCCATAAAGAAGATCCATGAACATCATAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCTGCAGAGTTTATTAATGCTTTGATAGCTTCTCAGAGCAAGGATCTGAAGCTTGTTGCTGGAGATGTAAGCCATAATGTTGAGAATGAACGACGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTTGTTCGCTACTTGACCCGGAAAAATGCTCGAAGTGATGCTCCTGGAAACATTTGA 1542 0.4734 MNNNINNPAKNAATPSFFANPGAPTIPMNHPSPHLLSQAQPQPQAGASHFHGHFQLSQPQTHVLAQPHPIPHPQVHNNSNTNANVATPAPPKRANHKPPSRPPGSSNATQSSAFKTMELTLAPPRKKRSFPEKLIPDKVAKLVPESAIYAKLLELETHIDSVLVRKKIDVQENVRSPRCVRRTLRIYVYNTFSKQVKVEPGKIDVEELSWVLRITGRMLEDGKDPVADGVLPKENPKFSAFFKKITIYLDQGFYPDNHVVVWDSARSAAQRDGFEVKRKGDKEFTAVVRMSMNHSPDKFVVSAQLARVLGVEFDSRSRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPIHLEHKIKLSGNCPAGATCYDVQVDVPLPLEKDMSSFLASTEKHKEIDVFDKLICDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSHNVENERRSEFYNQPWVEDAVVRYLTRKNARSDAPGNI* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2171 513 MobiDBLite consensus disorder prediction 72 88 - -
Pvu3g2171 513 Pfam SWIB/MDM2 domain 298 369 IPR003121 -
Pvu3g2171 513 Gene3D SWIB/MDM2 domain 290 376 IPR036885 -
Pvu3g2171 513 SMART swib_2 295 374 IPR019835 -
Pvu3g2171 513 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 75 510 - -
Pvu3g2171 513 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 75 510 - -
Pvu3g2171 513 MobiDBLite consensus disorder prediction 100 114 - -
Pvu3g2171 513 ProSiteProfiles SWIB/MDM2 domain profile. 294 371 IPR003121 -
Pvu3g2171 513 SUPERFAMILY SWIB/MDM2 domain 290 379 IPR036885 -
Pvu3g2171 513 MobiDBLite consensus disorder prediction 1 114 - -
Pvu3g2171 513 CDD SWIB_like 301 369 - -
Pvu3g2171 513 MobiDBLite consensus disorder prediction 31 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2171 Pvu-Chr3 42550392 42554084 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu3g2171 SWIB 6.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2171 K11650 - gmx:100790947 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2171 3 42550392 42554084 Pvu9g1723 9 24358352 24364039 ECH
Pvu3g2171 3 42550392 42554084 Pvu3g2171 3 42550392 42554084 ECH
Pvu3g2171 3 42550392 42554084 Pvu9g1723 9 24358352 24364039 PCT