Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1663 ATGGGAAACTGCTTCTCCGAAGTCACCGCAGGCCGCGCTGCCATTGGCGGCACCGCCGGAGATTTCCGCAGTCTTGCCGGCGCTCCAAACGACGCCGTCGAGCTCTTCCTCAGGTCTCGCGGCCACCACGGTCTCTTCTCTCAGATCGAGTTGTCGTTTTCCGCTTCTGGCTTGGGTGATCGTGATGTGCTTTTCAAGAATAATCCGATGATGGTTCTTTATGCAAAAGGAAAAAATGGAGCACTAGAGGAAATTTGCCGTACAGAAATAGTTCTGAGTTCATCAAGCCCAACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATCTAGATATAAAGATGCTTGAGCTAGATGAGCAGCAATTTCTTGGTGAGGCTACATGTGTACTATCTCAGATAATCACACAGCGTGATCAATCACTGACTATAGATCTACACACGGAAGATTCTTTGAGATCTACCCTTCCCAAAAACTGTGGGAAGCTTCTGGTGCATGCTGAGGAATGTGTTAGCTCAAAGACTGCAATAGAGATGGTGTTCAGGTGTTCAGATTTGGAATGCAAGGATCTCTTCTCAAGAAATGACCCCTTTTTATTGATATCAAAAGTTGTAGAAGGTGGTGTCCAAATTCCAATTTGCAAAACAGAAGTTATAAAGAATGATCTCAACCCAATATGGAAATCTGTGTTTGTGAATATTCAACAAGTAGGAAGCAAGGAGAGTATTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGAAAACATGATTTAATTGGAAAAGTGGAGAGATCTCTGGCTGAGTTTGAGAACATTCATAATACTGGACAAGGAGAAAATTTATGTTTGCCGTCTTCTGGTGGACAAAACCATGATAATAAGGTGTTAAAGAGCCAACTATTTGTGGACAAATTTATTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGCGGGGGGGTTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCGAATGGAAATCCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCAGGGCGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACTTGGGGATTTGGGGCACGACCAATTGATGGTCCTGTTTCTCATTGCTTCAACTTGAATGGAAGTAGTCATTATTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCATAATGTATCTCTCGCAGGACCTACTCTTTTTGGACCTGTCATAAGCACAGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTTCAAGAAACAAAAGAGGCCATTGTTAAAGCATCTGATCTGCCATTATCAATCCTCATTGTTGGGGTAGGAGGTGCTGATTTTAAAGAAATGGAGGTTTTAGATGCAGACAAGGGAGAGAGGCTTGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGAGGTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTAGCAGAATTACCGACTCAATTTTTAACCTACGTGCGGAGCAGAAACATCCAACCAAGCCTCTAG 1737 0.4208 MGNCFSEVTAGRAAIGGTAGDFRSLAGAPNDAVELFLRSRGHHGLFSQIELSFSASGLGDRDVLFKNNPMMVLYAKGKNGALEEICRTEIVLSSSSPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNLDIKMLELDEQQFLGEATCVLSQIITQRDQSLTIDLHTEDSLRSTLPKNCGKLLVHAEECVSSKTAIEMVFRCSDLECKDLFSRNDPFLLISKVVEGGVQIPICKTEVIKNDLNPIWKSVFVNIQQVGSKESILIIECYNFNSNGKHDLIGKVERSLAEFENIHNTGQGENLCLPSSGGQNHDNKVLKSQLFVDKFIESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALHNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKEAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSGFSVVQALLAELPTQFLTYVRSRNIQPSL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1663 578 PANTHER COPINE 1 577 IPR045052 GO:0005544
Pvu9g1663 578 Pfam Copine 362 576 IPR010734 -
Pvu9g1663 578 Gene3D C2 domain 194 312 IPR035892 -
Pvu9g1663 578 CDD vWA_copine_like 312 565 IPR010734 -
Pvu9g1663 578 ProSiteProfiles C2 domain profile. 29 162 IPR000008 -
Pvu9g1663 578 SMART VWA_4 341 538 IPR002035 -
Pvu9g1663 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 165 IPR035892 -
Pvu9g1663 578 SMART C2_3c 198 297 IPR000008 -
Pvu9g1663 578 SMART C2_3c 34 161 IPR000008 -
Pvu9g1663 578 Pfam C2 domain 198 290 IPR000008 -
Pvu9g1663 578 Pfam C2 domain 54 159 IPR000008 -
Pvu9g1663 578 CDD C2A_Copine 47 172 - -
Pvu9g1663 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Pvu9g1663 578 ProSiteProfiles C2 domain profile. 177 302 IPR000008 -
Pvu9g1663 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Pvu9g1663 578 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Pvu9g1663 578 CDD C2B_Copine 195 287 IPR037768 -
Pvu9g1663 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Pvu9g1663 578 Gene3D C2 domain 52 193 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1663 Pvu-Chr9 23321694 23332090 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1663 - - gmx:100799074 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1663 9 23321694 23332090 Pvu9g1663 9 23321694 23332090 ECH
Pvu2g2892 2 44494619 44507950 Pvu9g1663 9 23321694 23332090 PCT