Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2892 ATGGGCAACTGCTGCTCCGACGTCGCCGGCGGCAAAATGGCCGTTGGTGGCACCGCCTCCGACCATTACAACTCGGCCGGTCCCAACGACGCCGTCGATAACTTCTTCAGGTCTCGTGGCTATAACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATATAATCTCTAAGAGTGATCCAATGTTGGTTCTTTATGAAAAAGGAAGAAATGGAGCACTCAAGGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCACTTATCATTTTGAGACTGTTCAGAATTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATAGTGTAAAGATGCTTAAGCTAGAAGAGCAGGAACATCTAGGTGAGGCAACCTGTGCATTATCTGAGATAATAACAAAGTTTGATCGATCAATGGCATTAGATTTACACGCAGAAGATTTTAGCAGATCTACCCAGTCCCGAAACTGTGGAAAGCTCTTGGTGCACGCCGAGGAATCTGTTAGCTCAAAGACAACAGTGGAGATGACACTCAGGAGTTCTGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGATATCAAAAGTTGTGGAAGGTGGTAGTCATATTCCAATTTGCAAAACAGAAGTTGTAAAGAACGATCTCAACCCAATATGGAAGCCCGTGTTCATGAATATTCAACAAATAGGAAGCAAGGAAAATCCTTTGATACTGGAGTGCTATAATTTTAATAGCAATGGCAAACATGATTTGATGGGAAAAATGCAGAAATCTTTGACGGAGCTGGAGAAGCTTTTTTCCAGTGGCCAAGGAGGAAATTTTAGTCTGTCTACTGCTGCGAGTCATAATCCTCAAAACAAGATGTTAAAGGGTAGGTTATACGTTGACAAATATGCTGAAAGTGTCCAATATTCCTTCTTGGATTACTTGGCTGGGGGGTTTGAATTGAACTTCATGGTGGCTGTTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGACCAAATGCATACCAGAGGGCAATTTCAGAAGTTGGGGAGGTCTTACAGTGTTATGATTCAGATAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGGTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGCCATTACTGTGAGGTGGAAGGCATCCAAGGAATCATGAAGGCATACACAAGTGCCCTGCTTAACGTTTCCCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCAAGCCAATCTGTAGCAAATGGCGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCGGATCTACCATTGTCAATCCTTATTGTTGGTGTTGGAGGAGCCGATTTCAAAGAAATGGAGATTTTAGATGCGGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGTGACGTTCAAAGTGGAGAAATTTCAGTTGTTCAAGAACTTCTAGCTGAATTACCTACTCAATTTTTAACTTACGTGCGGAGCAGAAGTATCCAACCGAATGTCTAG 1734 0.4239 MGNCCSDVAGGKMAVGGTASDHYNSAGPNDAVDNFFRSRGYNGLFSQIELSFSASGLRDRDIISKSDPMLVLYEKGRNGALKELGRTEVILNSLNPTWITKHTLTYHFETVQNLVFRVYDVDTQFHNSVKMLKLEEQEHLGEATCALSEIITKFDRSMALDLHAEDFSRSTQSRNCGKLLVHAEESVSSKTTVEMTLRSSDLEYRDLFSRSDPFLLISKVVEGGSHIPICKTEVVKNDLNPIWKPVFMNIQQIGSKENPLILECYNFNSNGKHDLMGKMQKSLTELEKLFSSGQGGNFSLSTAASHNPQNKMLKGRLYVDKYAESVQYSFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAISEVGEVLQCYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMKAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQELLAELPTQFLTYVRSRSIQPNV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2892 577 Pfam C2 domain 53 151 IPR000008 -
Pvu2g2892 577 Pfam C2 domain 198 287 IPR000008 -
Pvu2g2892 577 PANTHER COPINE 1 576 IPR045052 GO:0005544
Pvu2g2892 577 SUPERFAMILY vWA-like 339 523 IPR036465 -
Pvu2g2892 577 CDD C2A_Copine 46 162 - -
Pvu2g2892 577 SMART C2_3c 47 159 IPR000008 -
Pvu2g2892 577 SMART C2_3c 196 295 IPR000008 -
Pvu2g2892 577 CDD C2B_Copine 193 288 IPR037768 -
Pvu2g2892 577 Pfam Copine 360 575 IPR010734 -
Pvu2g2892 577 ProSiteProfiles C2 domain profile. 175 300 IPR000008 -
Pvu2g2892 577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 289 IPR035892 -
Pvu2g2892 577 ProSiteProfiles C2 domain profile. 27 162 IPR000008 -
Pvu2g2892 577 Gene3D C2 domain 51 195 IPR035892 -
Pvu2g2892 577 Gene3D C2 domain 196 321 IPR035892 -
Pvu2g2892 577 ProSiteProfiles VWFA domain profile. 341 560 IPR002035 -
Pvu2g2892 577 SMART VWA_4 339 536 IPR002035 -
Pvu2g2892 577 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 576 - -
Pvu2g2892 577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 52 158 IPR035892 -
Pvu2g2892 577 CDD vWA_copine_like 309 564 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2892 Pvu-Chr2 44494619 44507950 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2892 - - gmx:100807801 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2892 2 44494619 44507950 Pvu9g1663 9 23321694 23332090 PCT