Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2884 ATGTCCGGGGCAGGCCAAGCCATAGACATGGAGAACGTGGGGTTTTCGAAAGCGAAAGCCGATCATGGCCGCGGCAAGAAAACGGGTCCGGTTTCGATGGATCACGTGCTTCTTGCCTTACGTGAGACCAAAGACGAGAGGGATCTTCGAATTCGGAGTCTCTTCAATTTCTTCGATGCTGCTAATAATGGGTACTTGGACTATGCTCACATTGAGGCTGGTTTGTCTGCACTGCAGATTCCCCCTGAGTATAAATATGCAAAGGAGCTTTTCAAGGTGTGTGATGCTGATAGGGATGGTAGGATTGATTACCGTGATTTTAGGCGCTACATGGATGACAAGGAGTTGGAGCTCTATCGCATATTTCAGGCCATTGATGTGGAGCACAATGGCTGCATTCTCCCTGAAGAGCTTTGGGATGCACTTGTCAGGGCTGGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAACGGAATTATCACTTTTGAAGAGTGGAGAGATTTTCTTCTACTTTATCCTCATGAAGCAACTATTGAAAATATATATCAGCATTGGGAGAGGGTGTGCCTTGTTGACATTGGGGAACAAGCTGTCATTCCTGAAGGCATCGGCAAACATGTGCACAGGAGCAGATATTTTATTGCTGGGGGAATAGCAGGAGCTGCTTCCCGTACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGGTCTTGCAAATTCAAACTGGACGAGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACGAGATGGTTTATTAGGGTTTTTCCGAGGTAATGGACTGAATGTTGTCAAGGTAGCTCCAGAGAGTGCCATCAAGTTTTATGCCTATGAAATGCTGAAAAATGTCATTGGAGATGCTCAACAGGGAAAGAAGGATATCGGTACTGCAGGAAGACTTCTTGCAGGTGGTATGGCTGGTGCAGTTGCACAGATTGCTATCTATCCTATGGATCTTGTCAAAACTAGGTTACAGACTTGTGCTTCTGATGGTGGAAGGGTTCCAAAGCTTGGTACACTTACAAAGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTACAGAGGACTTGTTCCATCTCTTCTGGGTATGATTCCGTATGCAGGGATTGATCTCACTGCATATGACACCTTGAAAGATCTATCAAAGAGATATATTCTTTATGACAGTGATCCTGGTCCTCTAGTACAACTTGGATGTGGGACAATTTCAGGTGCTCTTGGAGCTACTTGTGTCTATCCGCTGCAGGTTATTCGAACAAGGCTGCAGGCACAACCTATCAACAGTACCGGTGCTTACAAGGGAATGTCTGATGTATTCTGGAAAACTCTTAGGGATGAAGGCTTTAGAGGTTTCTACAAGGGGCTCATTCCTAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATATGGTTTATGAAAACATGAAGAAGAGTCTAGATCTTGAGTAG 1503 0.4518 MSGAGQAIDMENVGFSKAKADHGRGKKTGPVSMDHVLLALRETKDERDLRIRSLFNFFDAANNGYLDYAHIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYRDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVRAGIEIDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYQHWERVCLVDIGEQAVIPEGIGKHVHRSRYFIAGGIAGAASRTATAPLDRLKVVLQIQTGRASIMPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDAQQGKKDIGTAGRLLAGGMAGAVAQIAIYPMDLVKTRLQTCASDGGRVPKLGTLTKDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDLSKRYILYDSDPGPLVQLGCGTISGALGATCVYPLQVIRTRLQAQPINSTGAYKGMSDVFWKTLRDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKSLDLE* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2884 500 PANTHER SOLUTE CARRIER FAMILY 25 59 497 - -
Pvu2g2884 500 Gene3D Mitochondrial carrier domain 213 498 IPR023395 -
Pvu2g2884 500 SMART efh_1 50 78 IPR002048 GO:0005509
Pvu2g2884 500 SMART efh_1 153 181 IPR002048 GO:0005509
Pvu2g2884 500 SMART efh_1 86 114 IPR002048 GO:0005509
Pvu2g2884 500 SMART efh_1 117 145 IPR002048 GO:0005509
Pvu2g2884 500 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Pvu2g2884 500 Pfam Mitochondrial carrier protein 219 301 IPR018108 -
Pvu2g2884 500 Pfam Mitochondrial carrier protein 309 398 IPR018108 -
Pvu2g2884 500 Pfam Mitochondrial carrier protein 409 497 IPR018108 -
Pvu2g2884 500 Pfam EF-hand domain pair 88 113 IPR002048 GO:0005509
Pvu2g2884 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 408 496 IPR018108 -
Pvu2g2884 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 299 IPR018108 -
Pvu2g2884 500 SUPERFAMILY Mitochondrial carrier 214 492 IPR023395 -
Pvu2g2884 500 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Pvu2g2884 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 310 397 IPR018108 -
Pvu2g2884 500 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Pvu2g2884 500 Gene3D - 129 204 - -
Pvu2g2884 500 ProSiteProfiles EF-hand calcium-binding domain profile. 118 148 IPR002048 GO:0005509
Pvu2g2884 500 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Pvu2g2884 500 Gene3D - 18 117 - -
Pvu2g2884 500 PRINTS Mitochondrial carrier protein signature 221 234 IPR002067 GO:0055085
Pvu2g2884 500 PRINTS Mitochondrial carrier protein signature 234 248 IPR002067 GO:0055085
Pvu2g2884 500 PRINTS Mitochondrial carrier protein signature 274 294 IPR002067 GO:0055085
Pvu2g2884 500 PRINTS Mitochondrial carrier protein signature 325 343 IPR002067 GO:0055085
Pvu2g2884 500 PRINTS Mitochondrial carrier protein signature 370 388 IPR002067 GO:0055085
Pvu2g2884 500 PRINTS Mitochondrial carrier protein signature 417 439 IPR002067 GO:0055085
Pvu2g2884 500 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Pvu2g2884 500 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 59 497 - -
Pvu2g2884 500 SUPERFAMILY EF-hand 36 212 IPR011992 -
Pvu2g2884 500 Pfam EF-hand domain pair 117 176 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2884 Pvu-Chr2 44438700 44442324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2884 26 500 EF-hand Containing Proteins AT5G51050 77.358 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2884 K14684 - gmx:100791305 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2884 2 44438700 44442324 Pvu9g1641 9 23048771 23052165 PCT