Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1377 ATGGTTGGCCAGGATAATCTAAGGGCTGAGGACTTGAATTTGTGCTTTGAGAGGCTTATGAGGGTGGCTGGGAGTGGGAACAGTGAGAAAGGGATGAACTTGAAGGTTGGGGTGATTACCGAGTGGAAGGATATTCCTATGGAACTTTTGATGCAAATTTTGTCCCTTGTGGATGATCAGACAGTGATCACCGCTTCTGGAGTTTGTCGTGGATGGAGAGATTCTATCTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAGCTTGGTCCTATCACTTGTTCCTAAATTCACAAAACTGCAAACTCTAATCCTTCGTCAACACAAGCCTCAACTAGAGGATAAAGCTGTTGAGACTATTGCAGACTGCTGTCATGAATTGCAGATCCTGGACCTCAGCAAAAGCTTCAAGCTAACTGATCGTTCACTTTATGCTATTGCATTCGGTTGTCGCGATCTTACAAAACTCAACATCAGTGGGTGTTCAGCATTTAGTGACGGTGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTTTGTGGATGTGTTAGAGCTGCATCTGATACTGCATTGCAGGCTATTGGACAGTACTGCAATCAGTTACAATCTTTGAACCTTGGATGGTGTGATTATGTTGGAGATGTTGGAGTGACTACTTTAGCATATGGGTGCCCTGATCTTAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCTAACAGATGCCCCCATCTGAGGTCTCTTGGACTGTACTACTGCAAGAACATCACAGACAGAGCAATGTATTCTTTGGCACACAGCAAGGTGAATAACAGGATATCTGTGAAAGGAGGAAATGATGAAGATGGGTTAAGGACTTTGAACATCAGCCAATGCACTGCACTCACCCCATCTGCTGTTCAAGCGGTTTGTGACTCATTCCCATCTCTCCACACATGCTCAGGGAGGCACTCACTCATCATGAGTGGCTGCCTCAACTTGACCTCTGTGCATTGTGCCTGTGCTTTCCATGCACACCGTGCATTCACCCATTTCCCCCATCCAGCTCATTAA 1110 0.4514 MVGQDNLRAEDLNLCFERLMRVAGSGNSEKGMNLKVGVITEWKDIPMELLMQILSLVDDQTVITASGVCRGWRDSIYFGLARLSLSWCSKNMNSLVLSLVPKFTKLQTLILRQHKPQLEDKAVETIADCCHELQILDLSKSFKLTDRSLYAIAFGCRDLTKLNISGCSAFSDGALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDYVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRISVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAFHAHRAFTHFPHPAH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1377 369 PANTHER UNCHARACTERIZED 1 351 - -
Pvu9g1377 369 Pfam F-box domain 42 74 IPR001810 GO:0005515
Pvu9g1377 369 SUPERFAMILY RNI-like 79 350 - -
Pvu9g1377 369 SMART LRR_CC_2 261 286 IPR006553 -
Pvu9g1377 369 SMART LRR_CC_2 209 234 IPR006553 -
Pvu9g1377 369 SMART LRR_CC_2 235 260 IPR006553 -
Pvu9g1377 369 SMART LRR_CC_2 300 325 IPR006553 -
Pvu9g1377 369 SMART LRR_CC_2 156 181 IPR006553 -
Pvu9g1377 369 SMART LRR_CC_2 103 129 IPR006553 -
Pvu9g1377 369 SMART LRR_CC_2 182 208 IPR006553 -
Pvu9g1377 369 SMART LRR_CC_2 130 155 IPR006553 -
Pvu9g1377 369 Pfam Leucine Rich repeat 261 284 IPR001611 GO:0005515
Pvu9g1377 369 Pfam Leucine Rich repeat 209 232 IPR001611 GO:0005515
Pvu9g1377 369 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 351 - -
Pvu9g1377 369 SUPERFAMILY F-box domain 42 78 IPR036047 GO:0005515
Pvu9g1377 369 Gene3D - 41 75 - -
Pvu9g1377 369 Gene3D Ribonuclease Inhibitor 76 296 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1377 Pvu-Chr9 19595692 19599411 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1377 K03875 - gmx:100797840 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1377 9 19595692 19599411 Pvu9g1377 9 19595692 19599411 ECH
Pvu1g0673 1 8258937 8262787 Pvu9g1377 9 19595692 19599411 PCT