Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1349 ATGTGTCTCCTAAGCCAATCTGAGTTGAAGCGTATTTTTGAGAAAGTGGACGTCAATGGCGATGGCTTCGTGAGCCTTGAGGAGCTCAATCGGATGCTTCAAATGACAGGTAACTCCCACTATACCATACAAGAGTTGGAATCGCTGGTGGAAAACCAGAGCCTTGATTTCAGCCAGTTCTTGTTCTTTTACAACGGAGAAAGTAGAGCGAGTGGTGGTGGTGACTCAGAGGAATTGGAGTTGGAGAGCGACCTGATCAAAACCTTCAGGGTGTTTGACTTGGATGGAGATGGGTTCATCACCAGCCATGAGCTTGAGTCTGTGTTGAAAAGGCTTGGCATGTGGGATGAAACCAATTGCAATGATTCTGGAACCATGATTCGATTCTATGACACCAACTTCGATGGTCGTCTTGATTTTCAGGAGTTCAAGAATATGATGTTGGTTTCCAAAGCCTGA 459 0.4553 MCLLSQSELKRIFEKVDVNGDGFVSLEELNRMLQMTGNSHYTIQELESLVENQSLDFSQFLFFYNGESRASGGGDSEELELESDLIKTFRVFDLDGDGFITSHELESVLKRLGMWDETNCNDSGTMIRFYDTNFDGRLDFQEFKNMMLVSKA* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1349 152 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Pvu9g1349 152 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Pvu9g1349 152 CDD EFh 84 147 IPR002048 GO:0005509
Pvu9g1349 152 Pfam EF-hand domain pair 83 147 IPR002048 GO:0005509
Pvu9g1349 152 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Pvu9g1349 152 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 151 - -
Pvu9g1349 152 Gene3D - 78 152 - -
Pvu9g1349 152 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Pvu9g1349 152 Gene3D - 4 65 - -
Pvu9g1349 152 Pfam EF hand 8 35 IPR002048 GO:0005509
Pvu9g1349 152 ProSiteProfiles EF-hand calcium-binding domain profile. 118 152 IPR002048 GO:0005509
Pvu9g1349 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 151 - -
Pvu9g1349 152 SUPERFAMILY EF-hand 7 148 IPR011992 -
Pvu9g1349 152 SMART efh_1 122 150 IPR002048 GO:0005509
Pvu9g1349 152 SMART efh_1 8 36 IPR002048 GO:0005509
Pvu9g1349 152 SMART efh_1 84 112 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1349 Pvu-Chr9 19215390 19216046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1349 4 148 EF-hand Containing Proteins AT1G21550 41.216 2.02e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1349 K13448 - gmx:100527117 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1349 9 19215390 19216046 Pvu9g1349 9 19215390 19216046 ECH
Pvu1g0694 1 8660657 8661433 Pvu9g1349 9 19215390 19216046 PCT