Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0694 ATGTGTCCCCTAACACGAAGTGATCTGCAGCGGATTTTTGAGAAAGTGGACGTGAATGGAGATGGGTTTTTGAGCCTTGAGGAGCTGAACATGCTGCTAGAGAAGACGGGCTTCAAGTACAGCATTGAGGAGCTGGAGTCTCTGGTGGGAAAGAAGAGCCTTGACTTGAGTGAGTTCTTGTTGTTTTATGAATCTATGCTGAAGCAAAACAATGGGGAGGAAGAAGGGACTGATCGGGGTGATGGTGATGATGAGGTTGATGACCTTGTGAAGACCTTCAAAGTGTTTGATTTGGATGGTGATGGGTTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAGGCTTGGCATGTGGGATGAAAGGTGTGGCAAGGATAGCACAACCATGATTTGCTCCTATGACACTAATTTTGATGGCAAGCTTGATTTTCAGGAATTTAAGGACATGATGCTTCTCACAACTTCCTGA 471 0.4522 MCPLTRSDLQRIFEKVDVNGDGFLSLEELNMLLEKTGFKYSIEELESLVGKKSLDLSEFLLFYESMLKQNNGEEEGTDRGDGDDEVDDLVKTFKVFDLDGDGFITSQELECVLKRLGMWDERCGKDSTTMICSYDTNFDGKLDFQEFKDMMLLTTS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0694 156 Gene3D - 82 120 - -
Pvu1g0694 156 Gene3D - 5 70 - -
Pvu1g0694 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Pvu1g0694 156 Gene3D - 121 156 - -
Pvu1g0694 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Pvu1g0694 156 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 156 - -
Pvu1g0694 156 SMART efh_1 8 36 IPR002048 GO:0005509
Pvu1g0694 156 SMART efh_1 126 154 IPR002048 GO:0005509
Pvu1g0694 156 SMART efh_1 88 116 IPR002048 GO:0005509
Pvu1g0694 156 CDD EFh 88 151 IPR002048 GO:0005509
Pvu1g0694 156 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Pvu1g0694 156 Pfam EF hand 134 151 IPR002048 GO:0005509
Pvu1g0694 156 Pfam EF-hand domain pair 7 109 IPR002048 GO:0005509
Pvu1g0694 156 ProSiteProfiles EF-hand calcium-binding domain profile. 122 156 IPR002048 GO:0005509
Pvu1g0694 156 SUPERFAMILY EF-hand 8 152 IPR011992 -
Pvu1g0694 156 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Pvu1g0694 156 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0694 Pvu-Chr1 8660657 8661433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0694 4 152 EF-hand Containing Proteins AT1G21550 42.667 7.58e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0694 K13448 - gmx:100500561 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0694 1 8660657 8661433 Pvu1g0694 1 8660657 8661433 ECH
Pvu1g0694 1 8660657 8661433 Pvu9g1349 9 19215390 19216046 PCT