Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1128 ATGGAAGACGCCGGGAAGCCTCTGAAGTCCGGCAACCTGTCGCATAAGGTGGTTGATTTGGCTGTGGGAGAGGCACACAATCTCGTTCTTACTGGGGATGGCTGTGTGTACAGTTGGGGTAGAGGAATGTTTGGACGGATTGGGAGTGGCTCAGAAAAGGACGTGCTTTTTCCAGTACAACTCAACTTTGGAAACCCAAATCCAAACGGAACACAAGACACTGTCAAGATAGTGGGAATTTCTGCTGGAGCTTATCATAGTCTCGCTCTTGCAGCATTGACAGACATCTGCTATTTTATTGACTGCATTTTTAAAAGTAACCTGACATGCATGCAAGCTACTGTTGCACCGACGTTTGTTAAATTTATGTTCTGTACTAGCACCTACACCCTTGACTACTGTATGGATGGTCAACTTGGTACAAATGGAGAGGAATCACATGACCATGAATCTGATGTTGGAGACTCTTCTTTAGTGCCCCGCTTACTGAAGAGGTTTGATGAATTGCACCCCGTCAATTCTTCATTGGGTGTGTCTGAAGCAGAAGCTAAAACATCACTGAAGATATGTGCTGTCAAAGCTGGAGGAATGATGTCTCTGGCTATTGATAACCGTGGGACCCTGTGGATGTGGGGAAACTGCCCACAACAAATCAAAGAAGGTGAGTTAGCCCTTGTAAGCAGTTTCACTCCAACTCCAGTTTGGGATTTTCAGGGTCGATCTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTCGTAGTGCTGGTTAGTGCTGGGGAATCATACAATGGTGAAGATCTAGTATGCTACTCTTGGGGTTATAACACCCGTGGCCAATTAGGCTTGGGGGATAGAGAGAGCAGGCTGCATCCGGAAGTAGTTAAAACATTTGATGAGGAGTCATCACCCTATGAGGTGGCATGTGGTGCCTATCACACTGCTTTGCTCACTCGTATGAAGAAAACTAGTGATACATCAGACACCACATGCTGGACCTTTGGCCTTGGAGACAATGGCCAGCTTGGGCATGGAACAACACAAAGCACAATATTTCCTACACCTGTTAAAGAATTGCCACAAAATGTATCCCTTATTTGTGTTGACTGTGGTTTGTTTCATACAAGCGTAGTTTCCTCAGGTGGGGATGTGTGGTCATGGGGAATGGAAAAGGGTCTTGGCTTATGCCCTGATGCTAGTCGAGCTGGAACAGATTCTGGTGATGCACTGTCTCCCCGTCTTATGTCATGGAAGCCAAATCAACCTAAATTTCCAGATCCAGTTAAACTTGCATGTGGAGCCGCACATACTGTTATAATTGCGCAAGGGGGACATAGAATGTGGTCTTGGGGTAGGGGAAGAAGTGGAGTTCTTGGAGATGGCAAAGGCGAAGATTGTTACACTCCTACGCTCGTACTATGGCCTCAAATGATGGAGGATTCTGAGGAAGAGGAAGTAAAAAGCAATGGTGAGCAAGATAAGGCTAGAGAAGAAGAGACTGAAGCAACAACAGAAGCAGAAGAGAAACTATCCTCAGCATTGATTGAGCTGAAGCTGCTTCAAACAAAGCTATCTGTGATGAAAAAATATGTCAGTATACTTCATGGTTCTGTTTTTGGAAAGCCTTTTGAGGAGCAAGATATTCCCGATTCATTACAGAATTCAGATTCACTTGACATTGGAAAAGAATGGGAGAAGATGTTAGGTACAGCAGATCATAGGAAGCTAATTAGGTTGGAAATGTTTTACCGAGACATGCTTGCTGGAGTAAAAGATGAACTAATGAGGAGAAGGATCAAGGAAATTGTAAAGGAGTGTCTCCAATCTTCAGAGGTGTAA 1836 0.4461 MEDAGKPLKSGNLSHKVVDLAVGEAHNLVLTGDGCVYSWGRGMFGRIGSGSEKDVLFPVQLNFGNPNPNGTQDTVKIVGISAGAYHSLALAALTDICYFIDCIFKSNLTCMQATVAPTFVKFMFCTSTYTLDYCMDGQLGTNGEESHDHESDVGDSSLVPRLLKRFDELHPVNSSLGVSEAEAKTSLKICAVKAGGMMSLAIDNRGTLWMWGNCPQQIKEGELALVSSFTPTPVWDFQGRSVVKVACGNEHVVVLVSAGESYNGEDLVCYSWGYNTRGQLGLGDRESRLHPEVVKTFDEESSPYEVACGAYHTALLTRMKKTSDTSDTTCWTFGLGDNGQLGHGTTQSTIFPTPVKELPQNVSLICVDCGLFHTSVVSSGGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMSWKPNQPKFPDPVKLACGAAHTVIIAQGGHRMWSWGRGRSGVLGDGKGEDCYTPTLVLWPQMMEDSEEEEVKSNGEQDKAREEETEATTEAEEKLSSALIELKLLQTKLSVMKKYVSILHGSVFGKPFEEQDIPDSLQNSDSLDIGKEWEKMLGTADHRKLIRLEMFYRDMLAGVKDELMRRRIKEIVKECLQSSEV* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1128 611 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 4 611 - -
Pvu9g1128 611 MobiDBLite consensus disorder prediction 478 506 - -
Pvu9g1128 611 SUPERFAMILY RCC1/BLIP-II 12 144 IPR009091 -
Pvu9g1128 611 Gene3D - 125 507 IPR009091 -
Pvu9g1128 611 Gene3D - 2 96 IPR009091 -
Pvu9g1128 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 380 IPR000408 -
Pvu9g1128 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 258 IPR000408 -
Pvu9g1128 611 Coils Coil 477 497 - -
Pvu9g1128 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 442 IPR000408 -
Pvu9g1128 611 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 306 316 IPR000408 -
Pvu9g1128 611 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 611 - -
Pvu9g1128 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 93 IPR000408 -
Pvu9g1128 611 SUPERFAMILY RCC1/BLIP-II 120 474 IPR009091 -
Pvu9g1128 611 Pfam Regulator of chromosome condensation (RCC1) repeat 381 439 IPR000408 -
Pvu9g1128 611 Pfam Regulator of chromosome condensation (RCC1) repeat 33 90 IPR000408 -
Pvu9g1128 611 Pfam Regulator of chromosome condensation (RCC1) repeat 270 316 IPR000408 -
Pvu9g1128 611 Pfam Regulator of chromosome condensation (RCC1) repeat 330 376 IPR000408 -
Pvu9g1128 611 MobiDBLite consensus disorder prediction 479 505 - -
Pvu9g1128 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 319 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1128 Pvu-Chr9 16531500 16535386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1128 - - pvu:PHAVU_009G110000g 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1128 9 16531500 16535386 Pvu9g1128 9 16531500 16535386 ECH
Pvu9g1128 9 16531500 16535386 Pvu1g0765 1 10134484 10139961 PCT