Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1097 ATGGTGAATCCTTTGGTTGAACGTGCCACAAGCAGCATGCTCGTGGGCCCTGATTGGGCCTTGAACATGGAGATCTGTGATATACTCAATCGCGATCCTGGGCAAGGAAAGAATGTTGTTAAAGGTATAAAGAAGCGGCTTGGAAGTAAAGTTCCTAGAGTTCAAATTGCTGCACTGACTCTGTTGGAGACAATCATTAAGAATTGTGGAGACATTATCCACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTTAAAATAGCGAAGAAGAAGATCGATTATCATGTCCGAGAGAAGATATTGGTTCTTATAGATACTTGGCAAGAGGCTTTTGGAGGGCCAAGAGCAAGATATCCACAGTATTATGCAGCATACCAGGAGCTTTTGCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAGCGATCTGCACCTGTATTCACACCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGTGATACTGCTGCTCGACAAGACACAGCTGAGTCCTCTGCAGATTCTGAGTTTCCAGCCCTAAGTTTGTCAGAAATTCAGAATGCTCGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTGGACCCTGGTAACAAAGAAGGTCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCGGACGAGTCATTGCTATGCCAAGGCCTATCTCTGAATGATGATCTTCAGCGTGTCCTGGCCAAGCATGAATCCATTGCTTCGGAAATTTCTTCGGGAACTCCTTCTCAAAATCATACTGAGAATCTGAAGCCTGCACCTACTGGAGATTTTGATGGTCCTTTGGTTGATTTTGGAGATACCAGTAAACAAACGGATGGAAGGTCGTCTGCTATTGCTGAAACTGGGTCTCAACCATTGAACCAATTACTGCTTCCTGCGCCCCCAACATCCAGTGAATCAGCTCCCCCTGCAAAGGTTGATCCTAAAGTGGACCTGCTCAGTGGTGACGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTCGTTCCCTTAGGCGAACAGCAGCCAGCCAGCCCTATGTCTCAACAGAATGCCCTTGTTCTTTATGATATGTTTTCTAATGGAAGTAATTCACCTATTTCTGTTAATACCCAGCCAATTAATGTTGCCGGCCAAACTAGTCCATTTTCTCCTCAATTTCAACAGCAGCAGACTTTCATATCTCAAGGGCTGTTTTACCCCAATGGAGGTGTGCCAAATGTGGGGTCACCTCGATATGAACAATCACCTTATATGCAGAGCACAGGTCCTTCTTGGAATGGCCAGTTTGCGCAGCAGCTACAGCCTCCTTCACCAGTTTACGGTACTACTACAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCTCAGCCCACAGACAATGATAGTCCAGTAGTAGGCAGTCAATACCCACAACCATTGCAAGTCACTCAAGTGGTTATGACGCATATACAAAGTGGTGCACATCCTCAGGGACCGCAAGCAGCGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCAAATGCTAGCCATATCTCAACAATCAACAACAATGTTCAAAGTAATCAATCAGGCTTGTATCCGCAGCATATTCAGGGTGTTGCCAGTCCCTATACGGGTATGGCTTCACATCCAATGCATTCCATGTATCCTCAACAGATGTATGGCAACCAATTCGTAGGATATGGCTATGGTCAGCAACCAGCGGTTCAATATGTTGAGCAGCAAATGTATGGTTTATCAGTGAGAGATGATGGTGCTCTGAGAAATTCTTACCAGGTTTCTTCTGCTTCCTATGTGCCATCTGGGAAGCCTTCCAAACCAGAGGATAATTTATTTGGGGACCTTGTTAACTTGGCAAAAGTGAAACCAAAACCTACAGCTGACAAAACTGGTAGCTTGTAA 1995 0.4526 MVNPLVERATSSMLVGPDWALNMEICDILNRDPGQGKNVVKGIKKRLGSKVPRVQIAALTLLETIIKNCGDIIHMHVAERDVLHEMVKIAKKKIDYHVREKILVLIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPLQTQPLSSYPQNIRDTAARQDTAESSADSEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLAKHESIASEISSGTPSQNHTENLKPAPTGDFDGPLVDFGDTSKQTDGRSSAIAETGSQPLNQLLLPAPPTSSESAPPAKVDPKVDLLSGDDYNSPKAETSLALVPLGEQQPASPMSQQNALVLYDMFSNGSNSPISVNTQPINVAGQTSPFSPQFQQQQTFISQGLFYPNGGVPNVGSPRYEQSPYMQSTGPSWNGQFAQQLQPPSPVYGTTTSGGSFPPPPWEAQPTDNDSPVVGSQYPQPLQVTQVVMTHIQSGAHPQGPQAAGHDQAVGMYMQPNASHISTINNNVQSNQSGLYPQHIQGVASPYTGMASHPMHSMYPQQMYGNQFVGYGYGQQPAVQYVEQQMYGLSVRDDGALRNSYQVSSASYVPSGKPSKPEDNLFGDLVNLAKVKPKPTADKTGSL* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1097 664 Pfam VHS domain 4 129 IPR002014 GO:0035091|GO:0043130
Pvu9g1097 664 Pfam GAT domain 194 266 IPR004152 GO:0035091|GO:0043130
Pvu9g1097 664 PANTHER TOM1-LIKE PROTEIN 1 658 IPR044836 GO:0035091|GO:0043130|GO:0043328
Pvu9g1097 664 MobiDBLite consensus disorder prediction 267 284 - -
Pvu9g1097 664 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Pvu9g1097 664 CDD VHS 2 132 - -
Pvu9g1097 664 MobiDBLite consensus disorder prediction 456 479 - -
Pvu9g1097 664 CDD GAT_GGA_like_plant 188 266 - -
Pvu9g1097 664 Gene3D - 1 148 IPR008942 -
Pvu9g1097 664 MobiDBLite consensus disorder prediction 456 494 - -
Pvu9g1097 664 PANTHER TARGET OF MYB PROTEIN 1 1 658 - -
Pvu9g1097 664 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Pvu9g1097 664 MobiDBLite consensus disorder prediction 267 342 - -
Pvu9g1097 664 MobiDBLite consensus disorder prediction 302 329 - -
Pvu9g1097 664 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Pvu9g1097 664 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Pvu9g1097 664 SUPERFAMILY GAT-like domain 141 267 - -
Pvu9g1097 664 Gene3D - 182 274 IPR038425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1097 Pvu-Chr9 16105797 16114492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1097 - - var:108321848 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1097 9 16105797 16114492 Pvu9g1097 9 16105797 16114492 ECH
Pvu9g1097 9 16105797 16114492 Pvu1g0651 1 7867819 7881248 PCT