Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1092 ATGGCAACGCAATCGTTAGACGAGGAAACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGATAGCAACCTTCTCACCGATGGTTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGTTTGATTAGTTTGGCTCTGATTTGCTCTTTTAATCGGATGCGTAAGCACCTTACTTTGGGTGAGGTGAAGCCCGATGGAGTGCCCGAAGATACCGTGAAAGCTGTTGCGCAAACTTTGAGAAATTCTGCTTCACTCAAGGTCTCTGAAGATGGGAAAAGGGTTGGCAGAACAACTAAACTTCCGAATCCAGAAGAGGTTGCGCAGGCGGAGATAAGAACACTTGCTGTGTCACCATTTGAATATGATCTGAAGCTTGAAGATGTGGAGAAATTCTTTGGTCAATATGCTAAGGTTAATAGTGTGCGGCTTCCCCATCATGTTGGAGACAAAAAATTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGATGAAGAAGTAGAAAAAGTTTTGAAAGAAAAATTGGTGTATGCTGGGGCTGAGTTAGAATTAAAACTCAAGAAGGACTTTGATGCAGAGAGGGAAAAAGAATTAGAAGATTTTAAAAAATCTCGTCCACCTTTGGGTTCAAATCACCAGAATAACTCAAATGAAGAAGAAGAAAGCTACCCTAGAGGCTTAATTATTGCCTTCAAGCTAAAGAGTACCTCAGATGAAGTTCCTTCAGACCAAAGCGTTGCTGATCAACATAATAGTGCTGTCCCCAAAACAGGTGAAGAGCCTGAAATTGCTGCTGGAGAAAATGACCGAAAGGTAGATGAAGAAAACAATGAGACAAAAGAAGCAATGGAAACTGGAGGTCAAGACAACAATGAGATGAAAGAAGCTAAGGAAACTGGAAGTCAAGACAACAATGAGATGAAAGAAGCAAAGGAAACTGAAAGCGAAGAAAAGAATGAAACAAAAGAAACAAATGAAACGGAAGGTGGAGAAAAGAAGCGACAGGCTGGTGACAAATTTTCTGCCGCTGCTTACAAGGATAACATGGATGTCGTCTCACGTGAGGATTTAAGGAGTGTCTTCGAAAAATTTGGAACAGTGAAGTACATCGATTTCAAGATTGGAGAAGTGTCAGGATATATCCGATTTGAAGAAACGGAAGCCGCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAAGGCGGTTTGGCTGTAAAGAATTTCATTGCTATTTTAGATCCAGTGACTGGTGAGGCCGAAAGAGAATACTGGAGCCAGCTTCGTGGGAATCAAGGCAAGCACCGAGAATTTAAGAACAAGCAGGGAAGGGGGGGATGGCATGGTAGAGGGAGCAAAAATGCACGCTCTAGAGATAATAGTTCTAGAGTTGGTCGCCCAAATAAGGCTCAGAAAATTGGTGCTGCATAA 1440 0.4201 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKSITESEDGLISLALICSFNRMRKHLTLGEVKPDGVPEDTVKAVAQTLRNSASLKVSEDGKRVGRTTKLPNPEEVAQAEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSSDEEVEKVLKEKLVYAGAELELKLKKDFDAEREKELEDFKKSRPPLGSNHQNNSNEEEESYPRGLIIAFKLKSTSDEVPSDQSVADQHNSAVPKTGEEPEIAAGENDRKVDEENNETKEAMETGGQDNNEMKEAKETGSQDNNEMKEAKETESEEKNETKETNETEGGEKKRQAGDKFSAAAYKDNMDVVSREDLRSVFEKFGTVKYIDFKIGEVSGYIRFEETEAAQKARAAAVISEKGGLAVKNFIAILDPVTGEAEREYWSQLRGNQGKHREFKNKQGRGGWHGRGSKNARSRDNSSRVGRPNKAQKIGAA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1092 479 MobiDBLite consensus disorder prediction 242 345 - -
Pvu9g1092 479 ProSiteProfiles xRRM domain profile. 334 464 IPR014886 GO:0003723
Pvu9g1092 479 MobiDBLite consensus disorder prediction 210 224 - -
Pvu9g1092 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Pvu9g1092 479 Coils Coil 296 330 - -
Pvu9g1092 479 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Pvu9g1092 479 CDD LA_like_plant 10 99 - -
Pvu9g1092 479 PANTHER OS02G0610400 PROTEIN 4 479 - -
Pvu9g1092 479 Gene3D - 345 447 IPR012677 -
Pvu9g1092 479 PANTHER LUPUS LA PROTEIN-RELATED 4 479 IPR045180 -
Pvu9g1092 479 Pfam RNA binding motif 355 447 IPR014886 GO:0003723
Pvu9g1092 479 Gene3D - 2 104 IPR036388 -
Pvu9g1092 479 CDD RRM1_La 116 188 - -
Pvu9g1092 479 SMART la 8 100 IPR006630 -
Pvu9g1092 479 MobiDBLite consensus disorder prediction 431 447 - -
Pvu9g1092 479 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pvu9g1092 479 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pvu9g1092 479 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pvu9g1092 479 MobiDBLite consensus disorder prediction 200 225 - -
Pvu9g1092 479 SUPERFAMILY RNA-binding domain, RBD 355 439 IPR035979 GO:0003676
Pvu9g1092 479 Pfam La domain 14 84 IPR006630 -
Pvu9g1092 479 MobiDBLite consensus disorder prediction 430 479 - -
Pvu9g1092 479 Gene3D - 106 199 IPR012677 -
Pvu9g1092 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Pvu9g1092 479 SUPERFAMILY "Winged helix" DNA-binding domain 7 103 IPR036390 -
Pvu9g1092 479 SUPERFAMILY RNA-binding domain, RBD 109 192 IPR035979 GO:0003676
Pvu9g1092 479 MobiDBLite consensus disorder prediction 265 343 - -
Pvu9g1092 479 SMART rrm1_1 116 188 IPR000504 GO:0003723
Pvu9g1092 479 SMART rrm1_1 346 410 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1092 Pvu-Chr9 16045939 16049271 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1092 K11090 - gmx:100803099 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1092 9 16045939 16049271 Pvu9g1092 9 16045939 16049271 ECH
Pvu1g0628 1 7479137 7483383 Pvu9g1092 9 16045939 16049271 PCT