Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0628 ATGCGAAAGCACCTTCAACTGGAGGAAGTAAAACCGGCTGAGGTGAGCGAAGATACAGTCAAAGCTGTTGCTCAAGCTTTGAAAGATTCGGCTTTGGTCAGAGTCTCAGAAGATGGGAACAAAGTTGGCAGGTTAACTGAACTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATCGCCATTTCAATATGATGTGAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCCAAGGTTAACAGTGTTCGGTTGCCTCGCCATGTTGGAGACAAAAGGTTCTTTTGTGGCACTGCTCTTATTGAGTTTTCATCAGATGAAGAAATGGAATTCTTTTTGAAGAAAAACCTTGTCTATGCGGGGGCTGAGTTAGAATTAAAGCCAAAGAAGGACTTTGATATGCAGAGAGAGAAAGAATTAGAAGAGCATGAAAAATTTCGTCCACTTGTGGGTTTAGATCACCAGAATAACACAAATACAGAAGCAGTCTACCCTAAAGGCTTACTTATAGCCTTCAAGCTAAAGACTATTTCTGATGAAGTTCCTTCAGAACAAAATAACCCTGATCAACAAACCAATGACGCTCATGATATCGCCAAAAACGATCAACAAAATCCATCTGAAATTGCTGCTGAGGAAAGTGGTAAAAAGGTGTCAGAAAATTATGAGAATGATAAAGAAGACAGTGGGGTGAGTGAAGGAAAAGAGACTGAGGGTGAGGAAAAGAGTAAAGAAACTGGTGAAAAAAATTTCGCTGCTGCTGACAAGGACAACAAGTTTGTTGTCTCACGAGAGGACTTGAGGGTTGTCTTTGAGAAGTTTGGTACTGTGAAGTACATTGATTTCAAGATTGGAGAAGAGTCAGGATACATTCGATTTGAAGAACCTGAAGGTGCTCAGAAAGCTCGTGCAGCTGTAGTTCTTTCTGAAAAGGAGGGCTTAGATGTGAAGAATTGTATTGCTATTCTGGAACCAGTGACTGGTGAGGCGGAGAGAGAATACTGGAGCCTGCTTCGTGGTAATCAAGAAAAGCGCAGGGGATGTATGAATAACCGAGGAAGGGGAAGACAGCATGGGGGGAGAGGAGGTAAATTCAACCGGTCCAGAGAGAATGAATCTGCACTAGATCGCCCAAATAAAGTTAGAAGGTTTTAA 1176 0.4201 MRKHLQLEEVKPAEVSEDTVKAVAQALKDSALVRVSEDGNKVGRLTELLKPEEVIEQVEIRTIAASPFQYDVKLEDVEAFFGQYAKVNSVRLPRHVGDKRFFCGTALIEFSSDEEMEFFLKKNLVYAGAELELKPKKDFDMQREKELEEHEKFRPLVGLDHQNNTNTEAVYPKGLLIAFKLKTISDEVPSEQNNPDQQTNDAHDIAKNDQQNPSEIAAEESGKKVSENYENDKEDSGVSEGKETEGEEKSKETGEKNFAAADKDNKFVVSREDLRVVFEKFGTVKYIDFKIGEESGYIRFEEPEGAQKARAAVVLSEKEGLDVKNCIAILEPVTGEAEREYWSLLRGNQEKRRGCMNNRGRGRQHGGRGGKFNRSRENESALDRPNKVRRF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0628 391 CDD RRM2_La_like 269 331 - -
Pvu1g0628 391 MobiDBLite consensus disorder prediction 370 391 - -
Pvu1g0628 391 MobiDBLite consensus disorder prediction 353 391 - -
Pvu1g0628 391 CDD RRM1_La 62 134 - -
Pvu1g0628 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 146 IPR000504 GO:0003723
Pvu1g0628 391 Gene3D - 240 361 IPR012677 -
Pvu1g0628 391 ProSiteProfiles xRRM domain profile. 250 374 IPR014886 GO:0003723
Pvu1g0628 391 MobiDBLite consensus disorder prediction 188 257 - -
Pvu1g0628 391 SMART rrm1_1 62 134 IPR000504 GO:0003723
Pvu1g0628 391 SMART rrm1_1 256 324 IPR000504 GO:0003723
Pvu1g0628 391 MobiDBLite consensus disorder prediction 220 257 - -
Pvu1g0628 391 PANTHER LUPUS LA PROTEIN-RELATED 1 389 IPR045180 -
Pvu1g0628 391 PANTHER BNAANNG34180D PROTEIN 1 389 - -
Pvu1g0628 391 MobiDBLite consensus disorder prediction 188 217 - -
Pvu1g0628 391 SUPERFAMILY RNA-binding domain, RBD 267 359 IPR035979 GO:0003676
Pvu1g0628 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 121 IPR000504 GO:0003723
Pvu1g0628 391 SUPERFAMILY RNA-binding domain, RBD 53 141 IPR035979 GO:0003676
Pvu1g0628 391 Pfam RNA binding motif 269 361 IPR014886 GO:0003723
Pvu1g0628 391 Gene3D - 54 152 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0628 Pvu-Chr1 7479137 7483383 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0628 K11090 - gmx:100792984 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0628 1 7479137 7483383 Pvu1g0628 1 7479137 7483383 ECH
Pvu1g0628 1 7479137 7483383 Pvu9g1092 9 16045939 16049271 PCT