Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1025 ATGTCTTTTCTGGATAGGAAAATTCACAATAGCGGTGTGGTTGCTGAGGATGATATGAATCAGTTATATATGATCTGGAAGCCGGTTTGTTCAGGCTGTCGGGTCAACACCAAAGACAACCCTAATTGCTTCTGTGCGTTGATTCCACCTCAAAATGGAACCCGGAAATCTGGGTTATGGCAAAAGATGTCAGATTTTGTTGAAAGTCTTGGCCATGATCCAACTAAGGATCTTCGTGCAACTGCCAATTGTCCTGCAGGTCTCACAAATCTTGGCGCAACATGCTATGCCAACAGTATACTTCAGTGCTTGTACATGAATCAATCTTTTCGAGAAGGCATCTTTTCTCTAGAACGAGATGTTTTAGAACAACAGGCTGTGCTGGATCAGCTGACTCGACTTTTTGTGCAGTTGCATGTTAGCAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAGAACGCTTGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAATTTCTGACATTGCTCCTCTCTTTGCTCGAGGCTTGTTTAAGCCATTCCAAAGTGCCAAAGGCAAGAAGGATAGTGCAAGATCTTTTTCGGGGAAGTGTGTCTCATGTGACAACGTGTTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAGATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATCAGAGTCTAGATGAATATCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAGGAAGAGTTGACGCTACTCGCAGCATCAAACTGTGTACATTGCCCAAAGTACTTAATTTTCAACTCAAACGCTACGTCTTCCTTCCTAAGACTACAACAAAGAAGAAAATTTCTTCTGCTTTCTCGTTTCCTTCTGAACTTGATATGCGACATAGAATGTCTGAGCTGTCTCAATTCGACTTGGTGTATGACTTGTCAGCTGTATTGATTCACAAGGGAACTGGTGCTAATAGTGGTCATTACATTGCTCATATTAAGGATGTAAACACTGGACAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTGTCATCCATTTGGCGAAGGGTCTTCAAATTCTACCTCTAAATCCGTCAAGACTGATGCAATTCATTCTAATTGTTCTCAAGCGACTGACAGTAATGGAAATGGTTTGAATGCCTCTCATTCACAATCTTCACCTGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATACAAAAATGTTGCATGATGAAAGAGAGGGTGTGGAAGTTGCTTTGCAAAATGGTGCTTCTCTTGCATCTCATCTTTGTAATGAGATTCAAAATTTCAATGTCTCATATGATGAAGCTTGTCAGGAGTACAATAAGAAGAAAGAGTTGGAATTGGGTCGTATTACTGGAAGGAGACAGGAGGTACGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTGGAAAAACCATTTTATTGGATTTCTAGCGAATGGCTTCGCCAGTGGGCTGACAACATTATTCCAGTTCCTCTTGACAACTCGTCTGTCCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGATTACCTCAATGAAGCGAGTGTCTGCTAAAGCATGGGATACCTTGTTCTCCAAGTATGGTGGGGGGCCAGCATTATCTCATGATAACCACTGCTTGGATTGCCTGATTCATGGGGCTATGACAGTGGTTTCAGCTGATACCTATCGCGATAGAAGAGAATCAATGAAATCACTTGCACGGGATATTTTAGATGGAAACTGCCTGGATGGAAAGTATTACATATCCAGACCATGGTTGCAACAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCACCCATTAGTTGTCCACATGATGAACTGTTGCCTGAGAAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAAAGTTTTTGGTTCTTCTTATATGAAGATGCTGTTTCTGTAAAGCCTGATGATCCTTTGGGTGGCCCAAGTTTTTCTTCAGATTCCAAAGAGTGTTCCCAATGCAGTAATGAATTATCAGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAAGCAACGTCAGAATCATGACAAATTATTCCAGGCTAAAAGTCTGCCACTTTCTCTAAACTGCAAGTATTTCTTGGTGCCTTCATCATGGATTTCACAATGGAGAAATTACATCAATCCAACCCTGAAGAATTCAGATAAACCTGAAACTTTAGATGGGGCAATTGATTCATTGTTATGTGAAAAGCACTCACAGCTTCTTGAAAGACCTCCTGAATTGGTTTTCAGAAGGGGTGCAATAATCCAGAGGGAGTCTTCTGTAGGTGGCTTAACCATTGTATCTGAGAATGATTGGAAATGCTTTTGTGAAGAATGGGGTGGTATTGAGAACAAAGGAATATTTGCAACTATTGATCACACTAATGATCCAGACAATGTTTTGACTGGATCCAGTGAAGAGATGCTGATATGTAAGGATCAGTTGGGCACAGAAGATAAAATGAATTATGATAATGGAACTGGACAAATCTTCATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAGAGAGAGCTGTAAACTAATGCAGAAGCTTAATTATTGCAATGAGGACATATGTGTAATTCTTGTCCGTGGTAAGGAGGTACCAAGATCAATGTTGGAGGCTTCGAAAGGGTTTGTTGAAACAGATCGGCGAGTTTCCAAGCGTTCCCGTAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTTAAGGAAAACCAAATACTGCATAAAGGTGATAGGATAATTGATAGTGACAATGAATGTGTTACCCTCGCCGATGTGAACATTTTTGCGGGAAATCAGATTATAGTGAGAGACTCTGAGATCCACGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAGGGGTTCCGTGGAACACTACTCACAGCAAATGTTTCATCCCAGGTTGTTTAA 3150 0.4073 MSFLDRKIHNSGVVAEDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALIPPQNGTRKSGLWQKMSDFVESLGHDPTKDLRATANCPAGLTNLGATCYANSILQCLYMNQSFREGIFSLERDVLEQQAVLDQLTRLFVQLHVSKMAFIDSSPFVRTLELDNGVQQDSHEFLTLLLSLLEACLSHSKVPKARRIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDQSLDEYLTVEELNGDNQYFCESCKGRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKISSAFSFPSELDMRHRMSELSQFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSNSTSKSVKTDAIHSNCSQATDSNGNGLNASHSQSSPVETFLSSDAYMLMYHLKHTKMLHDEREGVEVALQNGASLASHLCNEIQNFNVSYDEACQEYNKKKELELGRITGRRQEVRSVLAEAPVQPLEKPFYWISSEWLRQWADNIIPVPLDNSSVQCSHGKVPVSKITSMKRVSAKAWDTLFSKYGGGPALSHDNHCLDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAPISCPHDELLPEKAPGAKRVLIPESFWFFLYEDAVSVKPDDPLGGPSFSSDSKECSQCSNELSEVACLEDSLRLVKQKQRQNHDKLFQAKSLPLSLNCKYFLVPSSWISQWRNYINPTLKNSDKPETLDGAIDSLLCEKHSQLLERPPELVFRRGAIIQRESSVGGLTIVSENDWKCFCEEWGGIENKGIFATIDHTNDPDNVLTGSSEEMLICKDQLGTEDKMNYDNGTGQIFIKTCPEVCESCIGERESCKLMQKLNYCNEDICVILVRGKEVPRSMLEASKGFVETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDSDNECVTLADVNIFAGNQIIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTANVSSQVV* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1025 1049 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 87 102 IPR018200 GO:0004843|GO:0006511
Pvu9g1025 1049 CDD Ubl_USP48 939 1040 IPR044743 GO:0004197|GO:0004843|GO:0016579
Pvu9g1025 1049 Gene3D - 938 1009 - -
Pvu9g1025 1049 ProSiteProfiles DUSP domain profile. 587 694 IPR006615 GO:0004843
Pvu9g1025 1049 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 6 1019 - -
Pvu9g1025 1049 Gene3D - 473 572 IPR035927 -
Pvu9g1025 1049 CDD Peptidase_C19L 87 424 IPR033841 GO:0004843
Pvu9g1025 1049 SUPERFAMILY Ubiquitin-like 940 1009 IPR029071 -
Pvu9g1025 1049 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 1019 - -
Pvu9g1025 1049 Gene3D Cysteine proteinases 70 427 - -
Pvu9g1025 1049 ProSiteProfiles Ubiquitin domain profile. 940 1006 IPR000626 GO:0005515
Pvu9g1025 1049 SUPERFAMILY Cysteine proteinases 83 427 IPR038765 -
Pvu9g1025 1049 ProSiteProfiles DUSP domain profile. 715 835 IPR006615 GO:0004843
Pvu9g1025 1049 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 323 341 IPR018200 GO:0004843|GO:0006511
Pvu9g1025 1049 ProSiteProfiles DUSP domain profile. 480 572 IPR006615 GO:0004843
Pvu9g1025 1049 Pfam Ubiquitin carboxyl-terminal hydrolase 87 424 IPR001394 GO:0004843|GO:0016579
Pvu9g1025 1049 SUPERFAMILY DUSP-like 490 572 IPR035927 -
Pvu9g1025 1049 Gene3D - 711 831 IPR035927 -
Pvu9g1025 1049 SMART dusp 498 569 IPR006615 GO:0004843
Pvu9g1025 1049 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 86 427 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1025 Pvu-Chr9 15230856 15239408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1025 85 361 Miscellaneous Gene Families AT2G24640 29.667 1.30e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1025 - - gmx:100815770 1904.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1025 9 15230856 15239408 Pvu9g1025 9 15230856 15239408 ECH
Pvu1g0593 1 6745311 6755684 Pvu9g1025 9 15230856 15239408 PCT