Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0593 ATGACTAGACCAACAACTCGAAATAAAAATAAAAGGCAAAGACAGGGGGATGACGATGACACTTCTGAAATATGGAGGAAAATTCATAAAACAGGTGCATTGACTGAAGATGATATAAGTCAACTGTATAGGATTTGGAAGCCTGTCTGTTCAGGTTGTCGTGTTAATACTAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCACCTCCAAATGGTACCCGGAAATCTGGCTTATGGCAGAAGATGTCTGACTTCTTTCTTGAAAGTCTTGGCCCTGATCCAACAACAGATCTTCGTGTTTCTGATTCTTCACCTGCAGGTCTGACAAATCTTGGCGCTACATGCTATGCCAACAGTATACTACAGTGCTTGTACATGAATAAATCTTTCCGGCAAGGCATATTTTCTGTAGAACCGGATGTTCTACAGCAGCAACCAGTGTTAGATCAACTGACTCGGCTTTTTGTAAGATTGCATGCTAGTAAAAAGGCTTTCATAGATTCTTCCCCATTTGTTAAAACACTGGAGTTAGACAATGGAGTTCAACAGGATAGCCACGAGTTTCTAACATTGCTTTTGTCATTACTTGAGCATTGTTTGAGCCATTCCAAAATAGCTATGGCAAGAACAATTGTTCAAGATCTTTTCCGAGGGACAGTGTCTCATGTGACGACGTGTTCACAATGTGGAAGAGAATCTGAAGCTTCTTCAAAAGTGGAAGACTTCTATGGGTTAGAATTGAATATCAAGGGACTAAAAGATTTAGATGAGAGCCTAGATGATTACCTTGCAATTGAAGAGCTTCATGGAGATAATCAATATTTTTGTGGGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCTGATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAATACAATGAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGTGCTGTAGATTGTCTGAGCCGTCTGAATTTGAATTGATATATGACTTATCAGCTGTACTGATTCACAAAGGCACTGATGTAAATAGTGGTCATTACATTGCCCATATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGCAGGTTACTAACTTGGGTTGTTCTCCATTTGGAGAAGGAGCTTCATCTTTTACTTCTAAATCTGTTAAGACGGATGCACTTCATTCTAATTGCTCTGAAGCAATGCTAGCTGACTGTAATGGTTTAGATGCCCCTGATTCACAATCTTCACTTGTGGAGACATTTTCATCTGGTGATGCATACATGTTAATGTATCTTAAGCATAGTAAAAATGTTGGTGAAAAAGGGGGCATGGTTTATGGTGCTAACTTTAAAGAATCAGAGGGCAGTGCAGTTACTGCACAAGAGAGCGCTTGTGTCCCTTCTCATCTTTGTGATGAGATTCAAAATTTTAATGCCTCATATCTTGATTCTTGCAAACAGTACAAACATAGGAAAATGTTAGAACTGAATTGTATCAATGAGAGGAGACAGGAAGTGCGATCTATTTTAGCTGAAGCTCCTACCAAACCACAAGAGCAACAGTATTTTTGGATCTGTAGTGACTGGCTTCGACAGTGGGCTGACACCATTATTCCAACTGCCCTTGACAATACATCTATCCAATGTTCGCATGGGAAAATTCCAGTGTCTAAGGTTGCCTCAATGAAGCGATTATCTTCCAAAGCGTGGGATAAATTATTGACTAAGTATGGTGGGGGACCAACTCTTTCTCATGATGACTGCTGTTGGGATTGTATCATTGAAGGGGCACAGAATGTGGTGGCAGCTGACTCCTATCGGGATCAAAGAGAATCGTTGAAGCAGTTTGCGCGGGTTATTCTTGATGGAAATTATGAAGATGGAATGTACTATGTGTCTAAACCATGGCTGCAGCAATGGTTGAAAAGAAAAGTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAACATCCATTACTTGTCCACATGGACAACTTATGCCTGAGGAAGCTGTTGGTGCCAAGCGGTTGCTTGTTCCTGAGGGTTTCTGGCTTTTCTTGTATAAAGATTCCATTTCTGTAAAACCTGATGATCCTCTAGGTTGCCCTGCTTTTCCTGTAGACTCAAGTGAATGTTCCCAATGCCGTGATGAAATATCTAAAGAGGCTTACTTTGAGGACTCTATGAGATTAGTGAAACAAATGCAACGACAAAATCATGAGAAATTATTTGCTGGTAAAAGTATGCCACTTTCTTTGCATGGCAAGTATTTCTTAGTTCCCTCATTGTGGATTTCAAAATGGAGAAATTACATTAATTTGGCTTTCAAGAATTCAGATAAACCTGAAACGTTAGATGGGGTAATTGATTCACTGATGTGTGAAAAGCATTCACGTCTGGTTGAGAGGCCTCCTGAACTGATTTATAGACGTGGTGATATAATCTCAAGAGAATCTTCTGTAGGTGGTTTAACCATCATATATGAGGATGATTGGAATTGCTTCTGTAAAGAATGGAGTGGTATTGAGACCAAAGGAATATCTGCAAGAATTGAGAATGTTAATGATTTAGAAAATGCTTTGAATGGGTCCTGCAAAGAGAAGCCTATATGTGAGGATCAGCTTGATACTTGGGATAAAGTGAATAATGAAAGTGTAAATGGAGCGAATGGACAACTTGTGATGAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAGAGCTTTGAGTTAGTGGAGAAACTAAACTATTGCGATAAGGACATTACTGTAATTCTTGTCCATGGAAAGGAGGTACCCAAATCTGTCTTGGATGCTGCAAAGGGCTTTGTTGAAACAGAGAGGAGGGTTTCTAAACGTTCTCGGAAGACTAAAAATGGGAGTTCAATTAGCCTAAAAGTTTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAACCAGATACTACAAAAAGGCAATAGAAGAATTGATGTTGATAACGAATATACTAAGCTTGTAGATGTTAATATATTAGCTGGAGATCATATTATTGTGAGGGACTCTCAGATCCATGAAAATCGAGATATTGCAGATGAGCTTTGTGATGAGGTAATGGAAACGCAGCATACCGAGGCAGGGTTTCGTGGGACACTCCTGACATCAAATTTTTCATCTCAGGTTGTTTAG 3249 0.3952 MTRPTTRNKNKRQRQGDDDDTSEIWRKIHKTGALTEDDISQLYRIWKPVCSGCRVNTKDNPNCFCALVPPPNGTRKSGLWQKMSDFFLESLGPDPTTDLRVSDSSPAGLTNLGATCYANSILQCLYMNKSFRQGIFSVEPDVLQQQPVLDQLTRLFVRLHASKKAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLEHCLSHSKIAMARTIVQDLFRGTVSHVTTCSQCGRESEASSKVEDFYGLELNIKGLKDLDESLDDYLAIEELHGDNQYFCGSCKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQNTMKKKITSAFSFPAELDMCCRLSEPSEFELIYDLSAVLIHKGTDVNSGHYIAHIKDENTGQWWEFDDEQVTNLGCSPFGEGASSFTSKSVKTDALHSNCSEAMLADCNGLDAPDSQSSLVETFSSGDAYMLMYLKHSKNVGEKGGMVYGANFKESEGSAVTAQESACVPSHLCDEIQNFNASYLDSCKQYKHRKMLELNCINERRQEVRSILAEAPTKPQEQQYFWICSDWLRQWADTIIPTALDNTSIQCSHGKIPVSKVASMKRLSSKAWDKLLTKYGGGPTLSHDDCCWDCIIEGAQNVVAADSYRDQRESLKQFARVILDGNYEDGMYYVSKPWLQQWLKRKVDAPSEADAGPTTSITCPHGQLMPEEAVGAKRLLVPEGFWLFLYKDSISVKPDDPLGCPAFPVDSSECSQCRDEISKEAYFEDSMRLVKQMQRQNHEKLFAGKSMPLSLHGKYFLVPSLWISKWRNYINLAFKNSDKPETLDGVIDSLMCEKHSRLVERPPELIYRRGDIISRESSVGGLTIIYEDDWNCFCKEWSGIETKGISARIENVNDLENALNGSCKEKPICEDQLDTWDKVNNESVNGANGQLVMKTCPEVCESCIGEKESFELVEKLNYCDKDITVILVHGKEVPKSVLDAAKGFVETERRVSKRSRKTKNGSSISLKVSASTSIYQLKMMIWESFGVVKENQILQKGNRRIDVDNEYTKLVDVNILAGDHIIVRDSQIHENRDIADELCDEVMETQHTEAGFRGTLLTSNFSSQVV* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0593 1082 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1052 - -
Pvu1g0593 1082 ProSiteProfiles DUSP domain profile. 511 603 IPR006615 GO:0004843
Pvu1g0593 1082 SUPERFAMILY Cysteine proteinases 106 446 IPR038765 -
Pvu1g0593 1082 Pfam Ubiquitin carboxyl-terminal hydrolase 108 445 IPR001394 GO:0004843|GO:0016579
Pvu1g0593 1082 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g0593 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Pvu1g0593 1082 SUPERFAMILY DUSP-like 514 602 IPR035927 -
Pvu1g0593 1082 SMART dusp 529 600 IPR006615 GO:0004843
Pvu1g0593 1082 ProSiteProfiles DUSP domain profile. 745 865 IPR006615 GO:0004843
Pvu1g0593 1082 Gene3D - 971 1042 - -
Pvu1g0593 1082 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1052 - -
Pvu1g0593 1082 SUPERFAMILY Ubiquitin-like 975 1041 IPR029071 -
Pvu1g0593 1082 CDD Peptidase_C19L 108 445 IPR033841 GO:0004843
Pvu1g0593 1082 Gene3D Cysteine proteinases 95 448 - -
Pvu1g0593 1082 CDD Ubl_USP48 972 1075 IPR044743 GO:0004197|GO:0004843|GO:0016579
Pvu1g0593 1082 Gene3D - 503 601 IPR035927 -
Pvu1g0593 1082 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 448 IPR028889 -
Pvu1g0593 1082 ProSiteProfiles DUSP domain profile. 618 724 IPR006615 GO:0004843
Pvu1g0593 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0593 Pvu-Chr1 6745311 6755684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0593 105 385 Miscellaneous Gene Families AT4G31670 29.043 2.00e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0593 - K11858 gmx:100795556 1894.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0593 1 6745311 6755684 Pvu9g1025 9 15230856 15239408 PCT