Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0948 ATGGGTGAGAGAAGCTTGATGATTGTTTCCAACGGAAGGCATCGCCGATCACCCAGCACGAGCCACATAGACCACAATTTTTCCTACTACAGGTTTCCTTCCGAAACGCTCAACCTCTCCATCATCAAATTGGACGCCTCTTCCTTCCGCGTTGAAGTTGCAAATGAAGCAACTGTTGCAGAACTCAAGCAGGCCGTGGAGGCGATTTTCGCTCACGTGCCTCTGAAGGCCCCGGGGAAAATATTGTGGCCACTTGTTTGGCGGCAATTTTGCTTATCCTATCAAGGACACAAATTAGTTACAGAAACGGATTACCTTCGAGATTATGGCATCAAGGATGGTGACCAGCTTCATTTCGTGCACCATATATCTGACACTTGCAGTTACCAGACTAAGCAGTCAAAGAAACGAGCTTTCAATTTGAAACAACACAAGAGGTCATCGTCTCATGAACTGAATAGACATCAACAGAAAGAACATAACGATGACGACGACGACATTGGTTTGAGTGGTATAGTCATAGAGAATGGGAAGATCCAGAATTGCAATGCAGAAGAAATTCGAGGAGGAAAGAGCTGGTTATCTCGTTTTTTGGGGGGAGGACTATCCTCACACGGCCGTCTGCCAGTTATAGCCCTCCTCTCAAATCCTCTTCTTCTCTCCAATCCAATCCTCAGACTGAGCTCATACACACATCCTAATCACAAAGCAGTAGCCATGGCAAACATGATTATGGCTTCCACCAAACCTTTGGTTCCAATCTGCACCAATTCTCGTACTCCCACATCCAAACTTCCTATTATCCAAATTTCACTCCCCAAAGTTCCAACCCTGAAACTGAAACTCCCAATTTCAAAGCCCCAGATGCTATCCCTCCTGGGCGGAATTGCACCACTGGTTTTGACTCAGCCCTCCCTCGCAAGCGAAATAGAGAAAGCTGCACTATTCGACTTCAACCTGACCCTGCCCATCATAATGGCGGAGGTTCTGTTCCTGATGGTTGCCCTGGACAAGATATGGTTCACCCCCCTTGGTAAATTCATGGACGAGAGGGACGCGGCGATCAGGGAGAAGCTGAGCAGCGTGAAGGACACGTCGTCGGAGGTGAAGCAGTTGGAGGAGAAGGCGAATGCCGTGATGGCGGCTGCTCGGGCGGAGATAGCGGCGGCGCTGAACGCGATGAAGAAGGAGACGCAGGCTGAGGTTGAGGAAAAGATTGCGGAGGGGAGGAAGAAAGTGGAGGCTGAGCTGCAGGAGGCTCTGGCTAACTTGGAGAGGCAAAAGGAAGAAACCATCAAGTCTCTTGATTCCCAGATTGCAGATCTTAGCCAGGAGATTGTTAAAAAGGTTCTTCCCATTGCTTAA 1365 0.4879 MGERSLMIVSNGRHRRSPSTSHIDHNFSYYRFPSETLNLSIIKLDASSFRVEVANEATVAELKQAVEAIFAHVPLKAPGKILWPLVWRQFCLSYQGHKLVTETDYLRDYGIKDGDQLHFVHHISDTCSYQTKQSKKRAFNLKQHKRSSSHELNRHQQKEHNDDDDDIGLSGIVIENGKIQNCNAEEIRGGKSWLSRFLGGGLSSHGRLPVIALLSNPLLLSNPILRLSSYTHPNHKAVAMANMIMASTKPLVPICTNSRTPTSKLPIIQISLPKVPTLKLKLPISKPQMLSLLGGIAPLVLTQPSLASEIEKAALFDFNLTLPIIMAEVLFLMVALDKIWFTPLGKFMDERDAAIREKLSSVKDTSSEVKQLEEKANAVMAAARAEIAAALNAMKKETQAEVEEKIAEGRKKVEAELQEALANLERQKEETIKSLDSQIADLSQEIVKKVLPIA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0948 454 Pfam Ubiquitin-like domain 38 123 IPR040610 -
Pvu9g0948 454 ProSiteProfiles Ubiquitin domain profile. 37 120 IPR000626 GO:0005515
Pvu9g0948 454 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 20 402 IPR039690 GO:0000398|GO:0005689
Pvu9g0948 454 Hamap ATP synthase subunit b' [atpF2]. 315 452 IPR034679 GO:0015078|GO:0015986|GO:0045263
Pvu9g0948 454 Coils Coil 355 445 - -
Pvu9g0948 454 Pfam ATP synthase B/B' CF(0) 332 451 IPR002146 GO:0015078|GO:0015986|GO:0045263
Pvu9g0948 454 Gene3D - 32 131 - -
Pvu9g0948 454 Hamap ATP synthase subunit b [atpF]. 316 453 IPR002146 GO:0015078|GO:0015986|GO:0045263
Pvu9g0948 454 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 20 402 - -
Pvu9g0948 454 CDD Ubl_SNRNP25 39 122 IPR040610 -
Pvu9g0948 454 SUPERFAMILY Ubiquitin-like 33 125 IPR029071 -
Pvu9g0948 454 CDD ATP-synt_Fo_b 321 451 - -
Pvu9g0948 454 MobiDBLite consensus disorder prediction 144 167 - -
Pvu9g0948 454 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0948 Pvu-Chr9 14293164 14296424 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0948 K02109 - pvu:PHAVU_009G092400g 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0948 9 14293164 14296424 Pvu9g0948 9 14293164 14296424 ECH
Pvu9g0948 9 14293164 14296424 Pvu1g0519 1 5657813 5661002 ECH
Pvu1g0519 1 5657813 5661002 Pvu9g0948 9 14293164 14296424 PCT