Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0934 ATGCCTTCCTTTTCCACTCTCCGGAGATTCTCTCAGTTCACCCAACGCTTCCATACCCTAAATTTCTCCACTTCCTCTTCTCCCAATCCACGTCCCAATTTCAAGTGGGGTTCAGGTTCAACCATTGTTGTAGGCGTAGCCTCTGCTCTTGCCCTTTTATATTGCTACAACCCACCCACTTCACCCTTCGAATTCCCTTTCTTAAACAATGCCCCTCGCAGTTCTTCACCGTCATTCTCTGAAAAATCATCCCTTCCTGAAACTACTCATGGTTTTCTTTTTGGAGATGCGTACAGAGCCAAGGTTTTCTTCAACTATGAGAAGCGCCTTCGGTTGCATAGTCCACCCCAAAAGGTTTTTGAGTACTTTGCATCTTGTCATACTCCAGAAGGAGAGATAGTCATGAAACCTGTGGACCTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCATCAGAATCTAACATAGTAAGAGAGGGATACTTGAAAGGTGAAAGAAGTCCTGGCCATTTGTGTTGTTCCCCTTCGCATTTTTTTATGCTTTTTGATGTAGACAACGATGAACTTATATCCTTTCAAGAGTATATCTTCTTTGTAACTCTGCTTAGCATCCCAGAATCAAGCTTCTCCGCAGCATTTAAAATGTTTGACAGGGATAATGACGGAGAGATAGATAAGGAAGAATTCAAGAAAGTGATGCAATCACTGCAATCTCATACTAGACAAGGTGTTCACCATGGGGATGGAAGACGAACTGGTCTAAAGGCCAATGCTTCTCAAGAGAATGGAGGGCTTGTGGAATACTTATTTGGTAAAGATGGAAAGGGACGCCTAAAGCATGATAAATTTGTTCAGTTTATAAGAGACTTGCATGATGAAATTGTGAGGTTGGAGTTTGCTCATTATGATTACAAATCTCGAAAAACTATATCGGCCAAGGACTTTGCACACTCCATTGTTGCTTCTGCTGACTTGAGTCATCTAGGCAGGTTGCTTAAACTAGTTGATGAATTGAGCAATGATCCGCGGTTTAAGGATGTACGCATTACATTTGAGGAGTTCAAAAACTTTTCCGAGCTGCGGAAAAAGTTATTACCATTTTCGTTGGCCATTTTCAGTTTTGCTGAAGTACAAGGCCTGTTAACAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGCGGTTTATCTCTCTCGGACAATGTGATTGAGATTGTTTTCCATTTGTTTGACGCAAATGGGGATGGTAGCCTGAGTACAGAGGAGTTTGTTAGAGTGCTACAACATCGAGAAAGAGACATTGCTCAAACCACGGAGACAGGAATCATGGGTTTTTTGTCATGCTGCTGGAAGTGTAGGAACACCTCTCCTTCTTCACGGTTGTTTTCCTGA 1389 0.424 MPSFSTLRRFSQFTQRFHTLNFSTSSSPNPRPNFKWGSGSTIVVGVASALALLYCYNPPTSPFEFPFLNNAPRSSSPSFSEKSSLPETTHGFLFGDAYRAKVFFNYEKRLRLHSPPQKVFEYFASCHTPEGEIVMKPVDLMRAVVPVFPPSESNIVREGYLKGERSPGHLCCSPSHFFMLFDVDNDELISFQEYIFFVTLLSIPESSFSAAFKMFDRDNDGEIDKEEFKKVMQSLQSHTRQGVHHGDGRRTGLKANASQENGGLVEYLFGKDGKGRLKHDKFVQFIRDLHDEIVRLEFAHYDYKSRKTISAKDFAHSIVASADLSHLGRLLKLVDELSNDPRFKDVRITFEEFKNFSELRKKLLPFSLAIFSFAEVQGLLTRDDFQRAASHVCGLSLSDNVIEIVFHLFDANGDGSLSTEEFVRVLQHRERDIAQTTETGIMGFLSCCWKCRNTSPSSRLFS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0934 462 CDD EFh 176 233 IPR002048 GO:0005509
Pvu9g0934 462 ProSiteProfiles EF-hand calcium-binding domain profile. 203 238 IPR002048 GO:0005509
Pvu9g0934 462 ProSitePatterns EF-hand calcium-binding domain. 216 228 IPR018247 -
Pvu9g0934 462 Pfam EF hand 209 235 IPR002048 GO:0005509
Pvu9g0934 462 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 462 - -
Pvu9g0934 462 Pfam EF-hand domain pair 378 429 IPR002048 GO:0005509
Pvu9g0934 462 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Pvu9g0934 462 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Pvu9g0934 462 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 462 IPR039800 GO:0005509|GO:0006851
Pvu9g0934 462 Gene3D - 160 241 - -
Pvu9g0934 462 SUPERFAMILY EF-hand 176 426 IPR011992 -
Pvu9g0934 462 Gene3D - 374 442 - -
Pvu9g0934 462 SMART efh_1 401 429 IPR002048 GO:0005509
Pvu9g0934 462 SMART efh_1 173 201 IPR002048 GO:0005509
Pvu9g0934 462 SMART efh_1 207 235 IPR002048 GO:0005509
Pvu9g0934 462 Gene3D - 248 362 - -
Pvu9g0934 462 CDD EFh_MICU 208 429 - -
Pvu9g0934 462 SUPERFAMILY EF-hand 267 358 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0934 Pvu-Chr9 14111878 14115485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0934 78 394 EF-hand Containing Proteins AT4G32060 68.770 2.44e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0934 K22827 - gmx:100786375 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0934 9 14111878 14115485 Pvu9g0934 9 14111878 14115485 ECH
Pvu1g0506 1 5489678 5494436 Pvu9g0934 9 14111878 14115485 PCT