Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0506 ATGTCTTCCTTTTCCGCCATCAGAACCCGATCCTCACCGTTCATCGCCCAAAGCTTCTCGATCCACCGCTTTCAGATCCGCCACTCCTCTACCTCTCCCTCCGCCTCCTCGATCCTCAACACCCCCGACCCCGACCCCGTCCCGACCGGGTTCGGTCGAACTGCACTTTCGACCGCTCTCGCCGGCTCCAGTGTCCTAGGGCTTCTTCTCTACGGCTTCTACTCTTTTTCGCCCACTAAAGATTTTGATTCAATCGCTTCCTTTGTTTACCGCTCAACGCCAAATTCCGAGGACCAAAACGAACCCCGCTCCTTCTTTCCGAAATTTTCACTCCCTGAAAGTTCCGGTAGCTTGCTACTTGGAGATGCGTTCAGGAGAAATGTTTTCTTCAACTATGAGAAGCGCATGAGGTTGCGAAGTCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTGATCGTAGTCCAAAAGGAGAAGTACTGATGAAACCAGCAGACCTAATGCGGGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACTTGGGAGGAGAAAGGAGTCCGGGTCATTTACGCTGCCCTCCTTCTGAATTTTTTATGCTTTTTGATGTAAACAATGACGGACTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCGGAATCAAGTTTTACGGTGGCATTTAAAATGTTTGATGTCAACAATAATGGGGAGATAAATAAGGAAGAGTTCAAGAAGGTGATGTCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGTGAATGATTCTGTGGAAGATGGAGGGCTGGTGGAATATTTTTTTGATAAAGATGGAAATGGAGGCCTCCAGCATGATAAATTTGTTAAATTTTTGAGAGACCTGCATGATGAGATTCTGAGACTGGAGTTTGCTCATTATGACTACAAATCACAAGAAACCATATCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCAGACATCAGTCATCTAAGCAAGTTGCTTAAACGGGTTGATGTATTGAATGATGATCCATGCCTCAAGGATGCACGTATCACATTTGAGGACTTCAAAAGCTTTGCTGAGCTACGAAAAAAATTAGTGCCATTTTCAATGGCTATTTTTAGTTTTGGAGAAGTAAATGGTCTGTTGACAAGAGACGATTTTCAGAGGGCAGCATCACAGGTATGCGGCATATCTCTCCCGGACAATGTGGTTGACATTGTTTTCCATGTGTTTGACACAAACCGGGACGGAAACCTAAATTTTGAGGAGTTTACGAGAGTGCTACACAAGCGAGAAAGGGACATGGCACAACCCGTGGGGACAGGAATCATGGGTTGGTTATCATGCTTCTGGAACTGTAGTAATAACAAATCTTCAGGGTTGTTTTCCTGA 1464 0.4536 MSSFSAIRTRSSPFIAQSFSIHRFQIRHSSTSPSASSILNTPDPDPVPTGFGRTALSTALAGSSVLGLLLYGFYSFSPTKDFDSIASFVYRSTPNSEDQNEPRSFFPKFSLPESSGSLLLGDAFRRNVFFNYEKRMRLRSPPEKVFEYFASDRSPKGEVLMKPADLMRAVVPVFPPSESHLVRDGYLGGERSPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFTVAFKMFDVNNNGEINKEEFKKVMSLMRSRHRQGVHHRDGLRTGLKVNDSVEDGGLVEYFFDKDGNGGLQHDKFVKFLRDLHDEILRLEFAHYDYKSQETISAKDFALSMVASADISHLSKLLKRVDVLNDDPCLKDARITFEDFKSFAELRKKLVPFSMAIFSFGEVNGLLTRDDFQRAASQVCGISLPDNVVDIVFHVFDTNRDGNLNFEEFTRVLHKRERDMAQPVGTGIMGWLSCFWNCSNNKSSGLFS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0506 487 Pfam EF hand 203 220 IPR002048 GO:0005509
Pvu1g0506 487 ProSiteProfiles EF-hand calcium-binding domain profile. 229 264 IPR002048 GO:0005509
Pvu1g0506 487 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 2 485 - -
Pvu1g0506 487 Gene3D - 139 288 - -
Pvu1g0506 487 SUPERFAMILY EF-hand 319 459 IPR011992 -
Pvu1g0506 487 Gene3D - 290 397 - -
Pvu1g0506 487 CDD EFh_MICU 234 455 - -
Pvu1g0506 487 ProSitePatterns EF-hand calcium-binding domain. 242 254 IPR018247 -
Pvu1g0506 487 SMART efh_1 233 261 IPR002048 GO:0005509
Pvu1g0506 487 SMART efh_1 427 455 IPR002048 GO:0005509
Pvu1g0506 487 SMART efh_1 199 227 IPR002048 GO:0005509
Pvu1g0506 487 Gene3D - 402 462 - -
Pvu1g0506 487 CDD EFh 202 259 IPR002048 GO:0005509
Pvu1g0506 487 Pfam EF hand 237 260 IPR002048 GO:0005509
Pvu1g0506 487 Pfam EF-hand domain pair 404 452 IPR002048 GO:0005509
Pvu1g0506 487 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 2 485 IPR039800 GO:0005509|GO:0006851
Pvu1g0506 487 SUPERFAMILY EF-hand 202 343 IPR011992 -
Pvu1g0506 487 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Pvu1g0506 487 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0506 Pvu-Chr1 5489678 5494436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0506 1 420 EF-hand Containing Proteins AT4G32060 61.751 3.42e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0506 K22827 - gmx:100806575 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0506 1 5489678 5494436 Pvu9g0934 9 14111878 14115485 PCT