Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1948 ATGCCAATAGTGGCATCATGGAAGTTCCAAAGTTTCTTTGTTATTTTGCTTACTTTCTTGTCTTATTCCTTTTCTTCTATTTTCACCATAACCAATAACTGCCCTCATACTATATGGCCTGGCACACTCTCTGGTTCTGGCTCACCGCCGCTTCCGACAACCGGATTCCAGCTGGACTCAGGCCAGATGATCAAACTCACTAGTGTTCCAGGGTGGTCAGGAAGGATTTGGGCTAGGACTGGCTGCACATTTGATGCAACAGGAATTGGCAAGTGTCAAACAGGTGACTGTGGTGGAAGATTGGAATGTGATGGAAATGGTGCTGCTCCTCCTACCTCATTGTTTGAGATAACACTTGGTCAAGGCAATGAGCAAGACTTCTATGATGTCAGCATGGTGGATGGCTACAATTTGCCATTGCTTGTTCAACCAAGAGGTGTCTATGGTACTGGGGTCTGTAATGCAACAGGTTGTGTCACAGACATCAACAGAGGTTGTCCAAAAGAACTTCAAGTAGTGGGTGGAGATGGATACCAGGATGGTGTAGTTGGGTGTAAAAGTGCTTGTGAGGCATTTGGATCGGATCAGTACTGCTGCAGTGGAGAATTTGCCAATCCAACTACATGCCAGCCATCCTATTATTCCACCCTTTTCAAGCAGGCTTGTCCAAAAGCTTATAGCTATGCATTTGATGATGCTACCAGCACTTTCATTTGCAAAGCTTTTGAATATGACATTGTTTTTTGTCCCAACAGCAACAGGGCTAAAACACCAAATGCTCCAATTCCTCCTCTACCACCATCAATTGGATGGCCTGATCAGAAGGTTCAACAGCAGCTCCATTCTTCTTCAGATATTCTCTTGCCCTTTCCTGTGACACTCTTTCTCTTTGTTGCCACTATCTCTGTGCTTGCAGCAAAGTCTCAGACACTGATATGA 939 0.4483 MPIVASWKFQSFFVILLTFLSYSFSSIFTITNNCPHTIWPGTLSGSGSPPLPTTGFQLDSGQMIKLTSVPGWSGRIWARTGCTFDATGIGKCQTGDCGGRLECDGNGAAPPTSLFEITLGQGNEQDFYDVSMVDGYNLPLLVQPRGVYGTGVCNATGCVTDINRGCPKELQVVGGDGYQDGVVGCKSACEAFGSDQYCCSGEFANPTTCQPSYYSTLFKQACPKAYSYAFDDATSTFICKAFEYDIVFCPNSNRAKTPNAPIPPLPPSIGWPDQKVQQQLHSSSDILLPFPVTLFLFVATISVLAAKSQTLI* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1948 312 CDD TLP-PA 27 249 - -
Pvu8g1948 312 ProSiteProfiles Thaumatin family profile. 25 252 IPR001938 -
Pvu8g1948 312 PIRSF PR5 1 281 IPR001938 -
Pvu8g1948 312 PANTHER THAUMATIN-LIKE PROTEIN 1B 4 266 - -
Pvu8g1948 312 PANTHER OS03G0233200 PROTEIN 4 266 IPR001938 -
Pvu8g1948 312 SUPERFAMILY Osmotin, thaumatin-like protein 27 251 IPR037176 -
Pvu8g1948 312 Pfam Thaumatin family 32 250 IPR001938 -
Pvu8g1948 312 SMART tha2 28 250 IPR001938 -
Pvu8g1948 312 Gene3D Thaumatin 27 250 IPR037176 -
Pvu8g1948 312 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Pvu8g1948 312 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Pvu8g1948 312 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Pvu8g1948 312 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Pvu8g1948 312 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Pvu8g1948 312 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1948 Pvu-Chr8 49202137 49203736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1948 12 251 Receptor kinase-like Gene Family AT5G38280 45.868 8.73e-71 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1948 - - gmx:100805642 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1948 8 49202137 49203736 Pvu9g0418 9 8092445 8093296 PCT