Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0328 ATGGCCTTGTGCAGGTGTTTCTCCTTCTTTACTGGAAAGAAAGAGGGAAACAAGGGTACTGCTGAAGGGCCTTTAACAGGGGACCTTAAAGCTCAACTTGGTGAAATACAGCACCCGAAGATTTCAACAGAGAGTCGTGATTTGAAGCCGGCCACCCTCGATGTCACGGTACCCTTTGGTGTGCAGAAGAATTCAAGGGGAAATGTGAGGATCATGAATCTTGAGAGTCCTGTGAAGACTGAGGTGGAGGAAGCTTATGAAGGGGAAGACGAGCATGAGGAGTCTCCTTCCATCAAGAGGGAGCTCTCTGATTTTGATCTTCAAGTCCACCAAGCTGCTGCAAGCAAAGGAGGATATGATCCATCAAATGAAGAGATAGAATACCCCAGTCCGTATGAAGACCAAGCTAACATTCAATTCGAAGACAGAGACCATAAATACAGCAAAAAGAGTGATGATATAATCCAAAGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTGACTTTTGGGCTTCTCCAGAGCTCAAGAGATCTTGTTCTGACCTGGAAAGAAGGGATGTATTTATGAAGACTTCTCATCTCTTTCCAACTTCTAAGTCACAGTCTTTTGAGGATTTGAAAGGATTATCAGCATATCAGATGGTTAATCTAAGCCCCAGGTCTGCGATGACTCACTGCAGTGCTGATAGAGTGATGTTGAAAAGGCATTCCTCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTGTGGAGCCACAGGAATATACATAGATCTAACTTAAGCAAGTCGACACAAATACATCCTGCAATTGCTGCTTTAAGTAGTCAATGTGGCTACTCCTCCGACACCGTTGAACCAAAACAAGGCAAGGCATTGAGACACGAAGAATCACCCTCACCAACCTCATCTTTTGGGGAATATTTTCAGAAAAGCTGCGATGACCAAAATATTGATAATCAAAGGTGGAGCAGATTTCAGAAAGAGAATTTTGGATTTTGGCCACAAAATCAATGGGTGGCTTTCTCAACAGAATCATCCTCGCTTAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCAGCCACCTCCTGAGGATGATTTTGGTGATGACAGCATTGGAAGCATTGCCTTTCCACCTTCTCCTGATGATGGTAGATCAATTGCAAGAAGCACATCTGAGTTGATTCGACATCCAGATGCCAATATTTCAAAAGATATAATGAATGCCAATAGTCTGGTCCAATCCCTGAACCCAGCCTCAACTGCAGCTCATATATCAGGCATTGGTATAAAAGCCATCCCCTCCCTTTCACACTTCTTCAGTCTCCGCTCTGTCAATTTGTCAAGCAATCTTATAGTTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACACTGAATCTGTCAAGAAACAAAATCAGCACTATTGAGGGCCTCAGAGAATTAACCCGGCTGCGGGTACTTGATTTAAGTTATAATCGCATTTCAAGAATTGGACAAGGATTATCAAATTGTACCCTTGTCAAAGAGCTATATCTTGCCGGAAACAAGATAGGTGATGTTGAAGGGCTACACAGGTTATTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCGCAACCACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTCCAGGCCTTGAGTCTGCTAGGAAATCCAATTCAAAGCAACATCAGCGATGACCAGTTGCGCAAAGCAGTTAGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCCCTTGGGAACAGCGGCCACAACTCCTACAGAAGAGTACTAAAGAAAGCTGGTGGCCAAGGAGGCTCAAGTTCCTCCAGTGTGCATAGAGGAAGTGCTAGTGTTTCCCACAGTAGCAGGAACAGGTCAAGGAGCCGAACTAAGCGTCATTAG 2013 0.4436 MALCRCFSFFTGKKEGNKGTAEGPLTGDLKAQLGEIQHPKISTESRDLKPATLDVTVPFGVQKNSRGNVRIMNLESPVKTEVEEAYEGEDEHEESPSIKRELSDFDLQVHQAAASKGGYDPSNEEIEYPSPYEDQANIQFEDRDHKYSKKSDDIIQSGHVSDPGIGKADFWASPELKRSCSDLERRDVFMKTSHLFPTSKSQSFEDLKGLSAYQMVNLSPRSAMTHCSADRVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRSNLSKSTQIHPAIAALSSQCGYSSDTVEPKQGKALRHEESPSPTSSFGEYFQKSCDDQNIDNQRWSRFQKENFGFWPQNQWVAFSTESSSLSRVDEWVKDLEIQQPPPEDDFGDDSIGSIAFPPSPDDGRSIARSTSELIRHPDANISKDIMNANSLVQSLNPASTAAHISGIGIKAIPSLSHFFSLRSVNLSSNLIVHITPGFLPKGIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKIGDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALSLLGNPIQSNISDDQLRKAVSGLLPKLVYLNKQSIKPQRGREILTDSVAKAALGNSGHNSYRRVLKKAGGQGGSSSSSVHRGSASVSHSSRNRSRSRTKRH* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0328 670 MobiDBLite consensus disorder prediction 639 660 - -
Pvu9g0328 670 Pfam Leucine rich repeat 450 505 IPR001611 GO:0005515
Pvu9g0328 670 ProSiteProfiles Leucine-rich repeat profile. 539 560 IPR001611 GO:0005515
Pvu9g0328 670 Gene3D Ribonuclease Inhibitor 511 609 IPR032675 -
Pvu9g0328 670 MobiDBLite consensus disorder prediction 288 311 - -
Pvu9g0328 670 ProSiteProfiles Leucine-rich repeat profile. 472 493 IPR001611 GO:0005515
Pvu9g0328 670 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 669 - -
Pvu9g0328 670 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Pvu9g0328 670 SMART LRR_typ_2 492 515 IPR003591 -
Pvu9g0328 670 SMART LRR_typ_2 448 470 IPR003591 -
Pvu9g0328 670 SMART LRR_typ_2 537 559 IPR003591 -
Pvu9g0328 670 SMART LRR_sd22_2 470 491 - -
Pvu9g0328 670 SMART LRR_sd22_2 537 558 - -
Pvu9g0328 670 SMART LRR_sd22_2 515 536 - -
Pvu9g0328 670 SMART LRR_sd22_2 492 514 - -
Pvu9g0328 670 MobiDBLite consensus disorder prediction 634 670 - -
Pvu9g0328 670 SUPERFAMILY Outer arm dynein light chain 1 439 604 - -
Pvu9g0328 670 Gene3D Ribonuclease Inhibitor 402 510 IPR032675 -
Pvu9g0328 670 Pfam Leucine Rich repeat 515 531 IPR001611 GO:0005515
Pvu9g0328 670 Pfam Leucine Rich repeat 539 550 IPR001611 GO:0005515
Pvu9g0328 670 PANTHER NISCHARIN RELATED 4 669 - -
Pvu9g0328 670 ProSiteProfiles Leucine-rich repeat profile. 517 538 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0328 Pvu-Chr9 6972383 6976122 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0328 - - gmx:100813969 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0328 9 6972383 6976122 Pvu9g0328 9 6972383 6976122 ECH
Pvu8g1803 8 45768662 45772232 Pvu9g0328 9 6972383 6976122 PCT