Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1803 ATGGCTATGTGCTTCTCTCTTTTGACTGTAAGGAAGGAGAAATACAAGGGGAGTGGAAGAAGGTCTTCAAAGGAGGACTTTAGCACTCTACTTGCCAAGCTACAATCTTCAAAAATAGCATCAGTGCCAACCACTTTTGATGTCACGGTATCGAATGGTATTCCAAAAAATTCAAGTTTCAATTCGGGGGTTACGAGTCTTGATACTTGTGTGGAGCCTGAAGTACAGGAGGCTTATGAAGGGGAAGATGAGAATGAATATTCACCGAAGATCAAGAGGGTACTTTCTGATTTTCATGTCCAAGATAATGAAGCTGTTGAAGGCAAAGGATATGATGAGTATCCCATTTTATATGAAAATCAAGTCATCGAAGAATTGGATGACAGAACCGATAAATACAGCCAAAAGAGTGTTGAAACAACCGAAAGTGGACACGTTAGTGATCCTGGGATTGGCAAAGCTGATTTGTGGACTTCTCCAAAGTTCAAGAGACACTTTTCTAACCTTGAAAAGTTTGATGAGCATGGGAAGAAAACTCATTATTTGTCAGCTTTGAAGTCAAAGTATTTTGAGAATTTTAAGGAAATAGCCGCAACGACTGATCTTGAAAGCCCTAGGTCAGTAATGAGTCACTACAGTGCTGATAGAGTAATGCTGAAAAGGCATTCTTCATGTCAGGTGCTTCCTTCTGGAAGAAAAAAGTTGTGGTGGAAGATGATCCTGTGGAGCCACAGGAACATACATGGAACTTTCTCTAGTGATTCAACACTACTTCCTGCTAGTGCTGCTTTAAATAGTGGGTACTCTTCAGACACCATTGAACCAAAACAAGGAAAGACATTGAGGTCTGTGACATCTTCTGGTTCTGTTACTGTGGAAACCCATAACAAAAGAAGAACTGGTAAAAATATAGATAATCAAAGGGGGAGCAGGTTTCAAAGTGACCGATGGATTGCTTTCTCCAAAGAATCATCCTCTTTTGCCAGAGTGGATGCATGGGTGAAAGGTCTTGAAATTCAGCCACTAATTCCTGAGGATGATTTTAATGTTGACAATGGCAGAAGCATTCCCTTCCCACCTTCTCCAGATAGTGGAACAATGATTAGAGCTGCATCTCAGTTGACTTATTCCGATGCCAATGCTTCAAAAGAGACTTTAACTGCCATTAGTCTAGTCCAGTCTCTAAATCCAGCTTCATCTATTGCTCACATATCTGGTATTGGTGTAAAAGCCATTCCTGCTATTTCACACTTATCCAATCTCCGCTCTGTCAACCTGTCAAACAATTTCATAGCTCACATCTCACCAGGATTTCTACCAAAGGGTATTCAAACACTTAACTTGTCAAGAAACAAGATCAGCACTCTTGACGGCCTCAGAGAATTGACCAAGTTGCGGGTAATTGACCTAAGTTACAACCGCATCTCGAGAATTGGACAAGGTTTGTCAAGTTGCACACTTGTCAAAGAACTATATCTTGTGGGGAACAAGATAAGTGATGCTGAAGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGATTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAGCTACAACTCACTTAAGGCTCTTAATCTGCTAGGAAATCCGATTGAAAGCAACATCAACCATGGCCAGCTAAGTAAAGCAGTCTCTGGTCTTCTTCCAAAGTTGGTGTACCTGAACAAGCAACCCCTCAAGGCTCACAGCACACGCGAAATATTAAGTGACAGTGTTGCCAGAGCTGCCCTTGGGAGCAGCACGCGAAGCTGTCACAAAAGATCAATAAGAAGACTTAGCCAGGGAGGATCAAGTCTTTCCAAAGGGTATAAAAGAAGTGCAAGTGGTTCCCAAAAAAGCACGAACCGAACAAGGAGGTGA 1905 0.4184 MAMCFSLLTVRKEKYKGSGRRSSKEDFSTLLAKLQSSKIASVPTTFDVTVSNGIPKNSSFNSGVTSLDTCVEPEVQEAYEGEDENEYSPKIKRVLSDFHVQDNEAVEGKGYDEYPILYENQVIEELDDRTDKYSQKSVETTESGHVSDPGIGKADLWTSPKFKRHFSNLEKFDEHGKKTHYLSALKSKYFENFKEIAATTDLESPRSVMSHYSADRVMLKRHSSCQVLPSGRKKLWWKMILWSHRNIHGTFSSDSTLLPASAALNSGYSSDTIEPKQGKTLRSVTSSGSVTVETHNKRRTGKNIDNQRGSRFQSDRWIAFSKESSSFARVDAWVKGLEIQPLIPEDDFNVDNGRSIPFPPSPDSGTMIRAASQLTYSDANASKETLTAISLVQSLNPASSIAHISGIGVKAIPAISHLSNLRSVNLSNNFIAHISPGFLPKGIQTLNLSRNKISTLDGLRELTKLRVIDLSYNRISRIGQGLSSCTLVKELYLVGNKISDAEGLHRLLKLTVLDLSFNKITTTKALGQLVASYNSLKALNLLGNPIESNINHGQLSKAVSGLLPKLVYLNKQPLKAHSTREILSDSVARAALGSSTRSCHKRSIRRLSQGGSSLSKGYKRSASGSQKSTNRTRR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1803 634 Gene3D Ribonuclease Inhibitor 363 484 IPR032675 -
Pvu8g1803 634 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 633 - -
Pvu8g1803 634 MobiDBLite consensus disorder prediction 605 634 - -
Pvu8g1803 634 Pfam Leucine Rich repeat 509 521 IPR001611 GO:0005515
Pvu8g1803 634 ProSiteProfiles Leucine-rich repeat profile. 464 486 IPR001611 GO:0005515
Pvu8g1803 634 SUPERFAMILY Outer arm dynein light chain 1 412 572 - -
Pvu8g1803 634 SMART LRR_sd22_2 485 506 - -
Pvu8g1803 634 SMART LRR_sd22_2 462 484 - -
Pvu8g1803 634 SMART LRR_sd22_2 507 528 - -
Pvu8g1803 634 SMART LRR_sd22_2 440 461 - -
Pvu8g1803 634 SMART LRR_typ_2 507 529 IPR003591 -
Pvu8g1803 634 SMART LRR_typ_2 418 440 IPR003591 -
Pvu8g1803 634 SMART LRR_typ_2 462 485 IPR003591 -
Pvu8g1803 634 Gene3D Ribonuclease Inhibitor 485 579 IPR032675 -
Pvu8g1803 634 PANTHER NISCHARIN RELATED 3 633 - -
Pvu8g1803 634 MobiDBLite consensus disorder prediction 598 634 - -
Pvu8g1803 634 Pfam Leucine Rich Repeat 420 441 IPR001611 GO:0005515
Pvu8g1803 634 Pfam Leucine Rich repeats (2 copies) 443 478 IPR025875 -
Pvu8g1803 634 ProSiteProfiles Leucine-rich repeat profile. 509 530 IPR001611 GO:0005515
Pvu8g1803 634 ProSiteProfiles Leucine-rich repeat profile. 442 463 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1803 Pvu-Chr8 45768662 45772232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1803 413 605 Receptor kinase-like Gene Family AT5G56040 31.280 4.17e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1803 - - gmx:100801034 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1803 8 45768662 45772232 Pvu8g1803 8 45768662 45772232 ECH
Pvu8g1803 8 45768662 45772232 Pvu9g0328 9 6972383 6976122 PCT