Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0314 ATGGACGCACGCATCAGTGTCAACATGTCAGAGGACAACAAGAGAAGCGCAGCAGCAGAGGAAGGAAAAACCAGGTTTGTTGGGATTCCCAATGCACCCAATCCAACACGGACACCACCATCCTGTCTCCGCGTCCTTCACCCTGACCACGTGGCTGTTGGGTCCCCCATTACCAAGGTTCCTCCTCCATATTCACCACCACCACCTCCCTCTCCCAAATTCTGGTTAGACCATGACCCTTCCACTCTCTCTCACACCCACACCAAATGGGCCAATGATCCCTCATTCATATCAGATTTCTCCAAAATGAATCTCCTTGATCAAACCCAAGCCAATGTGGACCCCTGTCCTTATTTTAATCAAACAGGAACCCTTCCAAACCCTTATGATTCTTGTTTCAATGAAACTGGAACCCTCCCATACGATCACCATGTCAGCAATGCCCGCTTGTTCAATGAACAAGGAACCCTCTCCTATCATGTTAACAATGCGGGTTTGTTCAACGAGTCAGAGACTCTTCCTTATCACCACCATGTTAATAACGTTAACATGTTCAATGAAACCGGGCCTCTCCTCCCGTATCACCACCATGTTAACAACGTGGGGCTGTTAGATAAAGGTTACACCTTTGATATCCCAGATGATCACGTTAATCATGTGTATCCTCATCTCGTAGACCAGAGGAGGAATCAGCTACATGCCAGTGGCAATTATCACATTTTTCGTGATCGTTATATGGCTCCACACTCTCCCAGAGGCTTCAAAAACCTCGTCAGGTTATCCCCAATGACGGCTATGAATTCCAATGCTAGTAATCCTTCGCATTATTATGTTGCAGCGAAAGAGAAGACGGAACATCCTCACTTCCTGCCTCCGAGGAGAGTCGGGGGAGACCCTGCAGCTTTTAGGTGTGACAATAGCATTATCTTACAAGGGAGAGATTCAAGGCGCTGCTTTGAGAAGGGGCATAGTTCTTCTTATAGAAGGGGTCCTACCCATGACGAGTTTTGTGTGGGTGGTAGTGTTTCCAAGAACTTTTTTCCTGGGGGTCCTTCTGGTCAAAAGATTGGGGAAATCTCACTGCCCATGCCGCTGGATTATTATTCTGTTCCTGACTCTCAGTGTTACATTTACAACCTGGCAAAGGATCAGAACGGTTGTCGTTTCCTGCAGCGGAAGGTTGATGAGGGAAGCTTCGAAGATATGTGTATTGTATTTGAGGGAATCATTGGGAGTGTAGTTGAACTTATGGTGGACTCTTTCGGGAATTATCTTGTGCAGAAGTTGCTCGATGTTTGCACCGATTTCCAACGTCTGCAGATTGTGCTCATGTTGACCAATCGACCAGGCCAGCTCGTTAGAATCTCTTTGAATACTCACGGCACGCGTGTGGTGCAGAAGTTGATTGAGACCCTCGATTCCGATGATCAAATTTCACTGGTCAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATCAAGGATCTGAATGGAAATCACGTCATTCAACGCTGCTTGCAATGCTTCAGCTGTCAAGATAATCAGTTTATCTTTGATGCTTCTGTGAAGTTTTGTATTGACATAGCTACTCATCAGCATGGATGCTGTGTACTGCAACGCTGTATTTATTACTCTATGGGTACAAATCGAGAGAGGCTGATCTCAGAAGTATGCAAACATGGACTTCTCCTCGCCCAGGATCCATTTGGAAATTATGTTGTTCAATATATTATAGAGACTGATACTCCAATTGCCGTAGCCAAAATGCTTGGTCAGTTTGAAGGGAATTATGTACATTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGTCTGAGAAATGTTGCAGATACCAGGTCCAGGATAGTTCGAGAATTGCTGTCTGCTTCTCATTTTGAACGGCTTTTGCAAGATCCATATGCCAATTATGTCATTCAATCTGCTCTCACCTTCACCAAGGGCCTTCTGCATGTTTCTTTGGTTGATGCAATTCGTAATTACAAAATGTTGCGCACCAGTCCATTTTGCAAGAGGATTTTCTCAGGAAATTTTCTGAGGAAGTGA 2070 0.4502 MDARISVNMSEDNKRSAAAEEGKTRFVGIPNAPNPTRTPPSCLRVLHPDHVAVGSPITKVPPPYSPPPPPSPKFWLDHDPSTLSHTHTKWANDPSFISDFSKMNLLDQTQANVDPCPYFNQTGTLPNPYDSCFNETGTLPYDHHVSNARLFNEQGTLSYHVNNAGLFNESETLPYHHHVNNVNMFNETGPLLPYHHHVNNVGLLDKGYTFDIPDDHVNHVYPHLVDQRRNQLHASGNYHIFRDRYMAPHSPRGFKNLVRLSPMTAMNSNASNPSHYYVAAKEKTEHPHFLPPRRVGGDPAAFRCDNSIILQGRDSRRCFEKGHSSSYRRGPTHDEFCVGGSVSKNFFPGGPSGQKIGEISLPMPLDYYSVPDSQCYIYNLAKDQNGCRFLQRKVDEGSFEDMCIVFEGIIGSVVELMVDSFGNYLVQKLLDVCTDFQRLQIVLMLTNRPGQLVRISLNTHGTRVVQKLIETLDSDDQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSCQDNQFIFDASVKFCIDIATHQHGCCVLQRCIYYSMGTNRERLISEVCKHGLLLAQDPFGNYVVQYIIETDTPIAVAKMLGQFEGNYVHLSTQKFSSHVVEKCLRNVADTRSRIVRELLSASHFERLLQDPYANYVIQSALTFTKGLLHVSLVDAIRNYKMLRTSPFCKRIFSGNFLRK* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0314 689 ProSiteProfiles Pumilio RNA-binding repeat profile. 520 555 IPR001313 GO:0003723
Pvu9g0314 689 ProSiteProfiles Pumilio RNA-binding repeat profile. 556 591 IPR001313 GO:0003723
Pvu9g0314 689 SUPERFAMILY ARM repeat 374 682 IPR016024 -
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 637 652 IPR001313 GO:0003723
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 596 629 IPR001313 GO:0003723
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 451 481 IPR001313 GO:0003723
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 489 519 IPR001313 GO:0003723
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 377 409 IPR001313 GO:0003723
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 525 558 IPR001313 GO:0003723
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 413 442 IPR001313 GO:0003723
Pvu9g0314 689 Pfam Pumilio-family RNA binding repeat 563 583 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 592 626 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 372 407 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 556 591 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 447 482 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 520 555 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 629 664 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 484 519 IPR001313 GO:0003723
Pvu9g0314 689 SMART pum_5 408 443 IPR001313 GO:0003723
Pvu9g0314 689 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 306 689 - -
Pvu9g0314 689 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 306 689 - -
Pvu9g0314 689 ProSiteProfiles Pumilio RNA-binding repeat profile. 408 444 IPR001313 GO:0003723
Pvu9g0314 689 MobiDBLite consensus disorder prediction 1 41 - -
Pvu9g0314 689 MobiDBLite consensus disorder prediction 1 21 - -
Pvu9g0314 689 Gene3D - 366 685 IPR011989 -
Pvu9g0314 689 ProSiteProfiles Pumilio RNA-binding repeat profile. 447 482 IPR001313 GO:0003723
Pvu9g0314 689 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 348 689 IPR033133 GO:0003723
Pvu9g0314 689 CDD Pumilio 375 683 IPR033712 GO:0003723
Pvu9g0314 689 ProSiteProfiles Pumilio RNA-binding repeat profile. 592 630 IPR001313 GO:0003723
Pvu9g0314 689 ProSiteProfiles Pumilio RNA-binding repeat profile. 484 519 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0314 Pvu-Chr9 6700888 6703732 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0314 - - pvu:PHAVU_009G030400g 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0314 9 6700888 6703732 Pvu9g0314 9 6700888 6703732 ECH
Pvu8g1794 8 45436834 45441416 Pvu9g0314 9 6700888 6703732 PCT