Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1794 ATGAGAAACGAAGAGGTTGGAGCTTGGTTGAATGGGTTTCCTAACCTTCACCATGCCAACGTTACGCCACAACCTTCCACTGCTCCCACCAACGCCTTTCCGATGTGGGGCCAAAACAACATCATCAACCACGACCATGATGTTGATGTCTTCCTGTCTAATGATTTTGCTAGAATGGGTGTTTTTGGTGAACAAGGGAATGGCGCTAACAAAACCAGAGGATATGGCCATGGACATGGACATAGATATGGTGTTGATGTTATGGACTCATCGTACACACATGCATTCCCACCCTCACACCCATACTCACACTCAAACTCACACTCACTCTCACTCTCACTCTCACACACACCTCGTAGTTCTTTGGATGGATATGCACATGTTGGTGAAGAAAGGGGTGCCCTGTCGTCTGCTTGGGGTATGAAGCCTTCTTCTGATGTGAAGGGACACAGTTTTGGACCCCCAATGGAATTTAACCAAAGGAGGAACACTTGTTATAGAAACCTTCAAAGGCAGAACCCGTTTCATGCTAGAGGGCCATTTGCAATGGATTGGGATATAAGGAGTCCCTTTATGCTCCCTCAAAGTTATCCCTCCATGCAGCAATCCAAGCTTACTACGAATGTGAACAATCCATCGCCTCATTTGTTCCCTGCAGTGAAAGAAAGAGCACCAACAAGGGTGGTCGTAGCCCCCAGTGGTGAATTTTCGCATTCTAGAGGGGACCCTGTGGCCTTTCAATGTGATGGTGGGTTTAACATGCAAGAGAAGGATGTAAAATGGTGTGTTGGAGGTAAAGGGTGCAAGTCTTTGAGGGCTTACAGAGGTAGTTTACCTTCGCCAGCTCAAACAGTGCCAGATGAAGTTCCTCAATTCATTCCTTCTCGCGTTCCTACTAGGCATGAAAATAATGGCATTCTTGCAAGTGATGTTTCTCTTTCTCCGCGGCCATTGTTCAATTTTCGTCCTTTGGTTAAGTTCCAAGGTTACATTTATCACCTGGCAAAGGATCAGAACGGTTGTCGCTTCCTACAGAGGATGGTTGATGAGGGCACCTCTGAAGATGCACAAATAGTGTTTAAAGGAGTTATAGATGATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTACCTCGTGCAAAAGCTGATTGATGTGTGTGCTGAAGATGAAAGATTTCAGATTGTGTCAATGTTGACTAGAGAACCAGGGCAACTACTCAAAACCTCTTTCAATACCCACGGAACTCGGGTGGTTCAGAAATTGATTGCGACTGTCAACTCTAGAAATCAAATTGCATTGCTGAGGTCTGCCATTCAACCTGATTTTCTTGATCTTATTAAGGATCTCAACGGAAATCATGTTATACAACGTTGCTTGCAGTACTTTAGTTGTAAAGATAATGAGTTTATCTTTGACGCTGCTACAAATTTCTGTATTGACATAGCTACTCATGAACATGGATGTTGTGTACTCCAACGTTGCATTGATTACTCCACCGGAAAGTACCAAGATAAGCTGATACAGGAAATATGTAGACATGGGCTTATTCTTGCTCAAGATCCATTTGGAAATTACGTTGTTCAATATATTATAGAGATGGAGATCCCAAGTATCTCATCCACGCTGCATTTCCAGTTCAAAGGGAACTACGTAAACCTTTCCATGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTCATGCATATTGCAGAGAGCAGGTCCGGAATAGTCCAAGAAATGTTATCTTTTCCTCACTTTGAGCGGTTGCTACCAGACCCATTTGCCAACTACGTTGTTCAACGTGCTCTCGGAGTGACCAAGGGTTCTCTGCATACATCTCTAGTGGAAGCAGTTCGACCCCACAAAATCTTGCGCACCAACCCTTATTGCAAAAGGATTTTCTCAAGGAACATACTTAATAAGTGA 1932 0.4374 MRNEEVGAWLNGFPNLHHANVTPQPSTAPTNAFPMWGQNNIINHDHDVDVFLSNDFARMGVFGEQGNGANKTRGYGHGHGHRYGVDVMDSSYTHAFPPSHPYSHSNSHSLSLSLSHTPRSSLDGYAHVGEERGALSSAWGMKPSSDVKGHSFGPPMEFNQRRNTCYRNLQRQNPFHARGPFAMDWDIRSPFMLPQSYPSMQQSKLTTNVNNPSPHLFPAVKERAPTRVVVAPSGEFSHSRGDPVAFQCDGGFNMQEKDVKWCVGGKGCKSLRAYRGSLPSPAQTVPDEVPQFIPSRVPTRHENNGILASDVSLSPRPLFNFRPLVKFQGYIYHLAKDQNGCRFLQRMVDEGTSEDAQIVFKGVIDDVVELMMDPFGNYLVQKLIDVCAEDERFQIVSMLTREPGQLLKTSFNTHGTRVVQKLIATVNSRNQIALLRSAIQPDFLDLIKDLNGNHVIQRCLQYFSCKDNEFIFDAATNFCIDIATHEHGCCVLQRCIDYSTGKYQDKLIQEICRHGLILAQDPFGNYVVQYIIEMEIPSISSTLHFQFKGNYVNLSMQKFSSHVVEKCLMHIAESRSGIVQEMLSFPHFERLLPDPFANYVVQRALGVTKGSLHTSLVEAVRPHKILRTNPYCKRIFSRNILNK* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 411 433 IPR001313 GO:0003723
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 367 399 IPR001313 GO:0003723
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 594 605 IPR001313 GO:0003723
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 518 533 IPR001313 GO:0003723
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 331 361 IPR001313 GO:0003723
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 443 473 IPR001313 GO:0003723
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 550 571 IPR001313 GO:0003723
Pvu8g1794 643 Pfam Pumilio-family RNA binding repeat 479 512 IPR001313 GO:0003723
Pvu8g1794 643 SUPERFAMILY ARM repeat 326 637 IPR016024 -
Pvu8g1794 643 ProSiteProfiles Pumilio RNA-binding repeat profile. 474 509 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 546 580 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 401 436 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 326 361 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 474 509 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 510 544 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 583 618 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 362 397 IPR001313 GO:0003723
Pvu8g1794 643 SMART pum_5 438 473 IPR001313 GO:0003723
Pvu8g1794 643 ProSiteProfiles Pumilio RNA-binding repeat profile. 362 397 IPR001313 GO:0003723
Pvu8g1794 643 ProSiteProfiles Pumilio RNA-binding repeat profile. 326 361 IPR001313 GO:0003723
Pvu8g1794 643 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 302 643 IPR033133 GO:0003723
Pvu8g1794 643 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 8 643 - -
Pvu8g1794 643 CDD Pumilio 329 638 IPR033712 GO:0003723
Pvu8g1794 643 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 8 643 - -
Pvu8g1794 643 ProSiteProfiles Pumilio RNA-binding repeat profile. 438 473 IPR001313 GO:0003723
Pvu8g1794 643 ProSiteProfiles Pumilio RNA-binding repeat profile. 398 436 IPR001313 GO:0003723
Pvu8g1794 643 Gene3D - 320 640 IPR011989 -
Pvu8g1794 643 ProSiteProfiles Pumilio RNA-binding repeat profile. 581 618 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1794 Pvu-Chr8 45436834 45441416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1794 - - pvu:PHAVU_008G173000g 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1794 8 45436834 45441416 Pvu8g1794 8 45436834 45441416 ECH
Pvu8g1794 8 45436834 45441416 Pvu9g0314 9 6700888 6703732 PCT