Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2890 ATGTGTATTACTACCCAGGAAGTTATCAAGCAGTTGGAATCCCTTATGGAAAACTTGGATGAGAAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATGCAACAGAAACTTTAGTGCGGTTTCTCAAAGCAAGGGACGGGAATGTTGTCAAAGCACATAAAATGTTGATTGATTGCTTACAATGGAGACTAGAAAATGACATTGACAATGTTTTAGCGAAGCCTATACCACCTGGTTTGTACAGAAGTTTGCGAGATACTCAACTTGTGGGAATGTCTGGTTTCACAAAGGAGGGCTTACCTGTCATTGTTATTGGTGTTGGGCTTAGCACATTTGATGAAGTGTTTGACAAATACTATGTACAGTTGCACATCCAAATGAATGAATATAGGGATCGAGTGACCATGCCAAGAGCTACAAAGAATCATGGACGACACATTAACACTTGTGTGAAAGTCTTGGATATGACTGGTTTAAAACTCTCAGCTTTGAACCAATTGAAGCTTTTGACTGCTATAACTACAATAGATGACTTGAACTATCCAGAAAAGACTGAAGCATATTACATAGTTAACGTTCCATATGTATTCTCAGCGTGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAAGAAAGTCCATGTACTCAAAGGTTGTGGCACAGAAGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGAAGGATTCCAGGGTGCTCCGAGATGATGCAGCAGGAAATACTGAAAATTGTTTCTCCTTTGATCATGTCTTCCATAAACAACTATATAATTACATCGAGCAGCAGGCTATGTTCATAGAGTCCATATCCCAGGATTCTTTCCATGTAGATTTACCGGAGCCAGACCTGGTTGATGCCAAAATTGCCAAGACTATAGAAACCGAGTTCCACAAACTGGAAATTCAGAATGGCTTCACCAACTGA 972 0.4002 MCITTQEVIKQLESLMENLDEKQKNTFQNMHQGYATETLVRFLKARDGNVVKAHKMLIDCLQWRLENDIDNVLAKPIPPGLYRSLRDTQLVGMSGFTKEGLPVIVIGVGLSTFDEVFDKYYVQLHIQMNEYRDRVTMPRATKNHGRHINTCVKVLDMTGLKLSALNQLKLLTAITTIDDLNYPEKTEAYYIVNVPYVFSACWKVVKPLLQERTRKKVHVLKGCGTEELLKVMDYASLPHFCRKKDSRVLRDDAAGNTENCFSFDHVFHKQLYNYIEQQAMFIESISQDSFHVDLPEPDLVDAKIAKTIETEFHKLEIQNGFTN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2890 323 Coils Coil 2 29 - -
Pvu8g2890 323 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 238 IPR001251 -
Pvu8g2890 323 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Pvu8g2890 323 Pfam CRAL/TRIO, N-terminal domain 10 59 IPR011074 -
Pvu8g2890 323 SUPERFAMILY CRAL/TRIO N-terminal domain 11 74 IPR036273 -
Pvu8g2890 323 PANTHER OS09G0258000 PROTEIN 1 323 - -
Pvu8g2890 323 PANTHER - 1 323 - -
Pvu8g2890 323 CDD SEC14 90 240 IPR001251 -
Pvu8g2890 323 Pfam CRAL/TRIO domain 88 240 IPR001251 -
Pvu8g2890 323 Gene3D - 3 262 IPR036865 -
Pvu8g2890 323 SMART sec14_4 85 246 IPR001251 -
Pvu8g2890 323 SUPERFAMILY CRAL/TRIO domain 82 240 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2890 Pvu-Chr8 58678348 58682083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2890 29 315 Acyl Lipid Metabolism Gene Families AT1G55840 66.323 5.28e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2890 - - vra:106764338 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2890 8 58678348 58682083 Pvu8g2890 8 58678348 58682083 ECH
Pvu6g0619 6 17576670 17582274 Pvu8g2890 8 58678348 58682083 PCT