Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2846 ATGGATATTTCTCAGTGTACAAGGATTGTGTTTGATAAAATTCATAAATTTGAGCCAGAGCATGCTAGAAAGATAATTGGCTATCTCCTCCTAAAAGATCATGGAGAACTAGAAATGGCAAAATTGGCTTCTTTCCCTGACTATTTCATCCGTGAAGTGGCATTTCAGGCCAAAAGGGAGCTCCTAATATTGTCTATACCAGATATGCTCCCAATTTCACATATTCTCAACCCTGAACAATGTTTAAGCCATTTAGCAGTAATGTCCCCTAGAACTCCTACTTCACCAAGCTTTCATGTTCCCTCTCTCTATTGGGATCCACAACCTGCTGGCAATATCAATGCAGACTTTATGGCAATGAACTACATGGATTCCATCATGGAACTTCAGAAGCAGACACAGTTGTGCAGTTTGGAGAATCGTATAGATGCTGTAAAGACTAGCACAGTAGGGGTTGCCAACGATTACTATAGAGATGCTTCTGCTGCCAATCTGGGTGGAAAAGCTAGGAGAAGGTTTTCTGAATTTCCAATGAAAGTTTGTCACTATTTCAACAAAGGATTCTGCAAGCATGGAACAAGCTGCAGATTCTATCATGGCCAAGTTGCTCCTGAGAATTTATCTCAGATGTATGGAAATGATGGTGTTGGTGAGGATCAGGTGATTTCCCCAGGGTCACTAGCACAGCTAGAATCAGAAATTATTGAGCTTCTAAGATCAAGGGGCAGTCCAATATCCATTGCTTCTCTGCCAATGGCATACTATGATAAATACAAGAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAAAGACATGGCAAGTCTGGTTATAGTTTGACAAAGCTTCTTGCGCGACTGAAAAACAGTATTCTGCTCATAGGCAGACCTCATGGGCAGCATTCAGTGTTTCTGGCAGAAGATGCTCCCACACAAATGCTGGAAGGAGAGTTTGCTCGAAATATCAGTGCTTCACGACAAATATATCTGACATTCCCTGCTGACAGCATTTTCACAGAGGATGATGTCTCAAACTACTTCAACGCATTTGGGCCTGTTGCAGATGTTAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACTGTCAAAGCTGTTTTGGAGAAGGGGAATCCCCATTCTGTTCGGGGTTCTCGGGTTCTTGTGAAGCCTTACCGGGAGAAAGCAAAGATTAATGAGAGGAATAGAATTGAGCACACTGTTTATTATTCACCACGCTCTGTAGATACGGACTCTGAACTCAACTCAATTCCAAGAAGTTTTGGGAATCCTAGATCCATTAGGAGTCAACTGATTGAAGACCAAGACCAAGAGCAGACTCTGGAACATGAGAGGAGAAGTTTTGCACAACTGCAGTTTTCCTCAATACCTTTATCCACCTCACCTAATTTTGGCTTGTCCTTGGATGAAACAAACATTTCAGATGATCACTTCAATTTCCAACCACTAGAAGAATCTTTCCATGGTAAATCCATACATACAGATGACAAATCCTCTGATGAGGAAAGCTATGAAGGACTCAACCTCCCAGACAGTCCATTTGCGTTTCCAATAGATAGTGAGATGTAA 1614 0.4164 MDISQCTRIVFDKIHKFEPEHARKIIGYLLLKDHGELEMAKLASFPDYFIREVAFQAKRELLILSIPDMLPISHILNPEQCLSHLAVMSPRTPTSPSFHVPSLYWDPQPAGNINADFMAMNYMDSIMELQKQTQLCSLENRIDAVKTSTVGVANDYYRDASAANLGGKARRRFSEFPMKVCHYFNKGFCKHGTSCRFYHGQVAPENLSQMYGNDGVGEDQVISPGSLAQLESEIIELLRSRGSPISIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSILLIGRPHGQHSVFLAEDAPTQMLEGEFARNISASRQIYLTFPADSIFTEDDVSNYFNAFGPVADVRIPNQQRRMFGFVTFVHSETVKAVLEKGNPHSVRGSRVLVKPYREKAKINERNRIEHTVYYSPRSVDTDSELNSIPRSFGNPRSIRSQLIEDQDQEQTLEHERRSFAQLQFSSIPLSTSPNFGLSLDETNISDDHFNFQPLEESFHGKSIHTDDKSSDEESYEGLNLPDSPFAFPIDSEM* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2846 537 SUPERFAMILY CCCH zinc finger 177 200 IPR036855 GO:0046872
Pvu8g2846 537 SUPERFAMILY RNA-binding domain, RBD 338 419 IPR035979 GO:0003676
Pvu8g2846 537 CDD RRM_AtC3H46_like 329 398 IPR034365 -
Pvu8g2846 537 Gene3D - 328 407 IPR012677 -
Pvu8g2846 537 SMART rrm1_1 328 398 IPR000504 GO:0003723
Pvu8g2846 537 ProSiteProfiles OST-type HTH domain profile. 226 308 IPR025605 -
Pvu8g2846 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 394 IPR000504 GO:0003723
Pvu8g2846 537 ProSiteProfiles Zinc finger C3H1-type profile. 175 202 IPR000571 GO:0046872
Pvu8g2846 537 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 535 - -
Pvu8g2846 537 MobiDBLite consensus disorder prediction 501 537 - -
Pvu8g2846 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 201 IPR000571 GO:0046872
Pvu8g2846 537 SMART c3hfinal6 175 201 IPR000571 GO:0046872
Pvu8g2846 537 Pfam OST-HTH/LOTUS domain 226 304 IPR025605 -
Pvu8g2846 537 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 535 - -
Pvu8g2846 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 402 IPR000504 GO:0003723
Pvu8g2846 537 MobiDBLite consensus disorder prediction 503 519 - -
Pvu8g2846 537 Gene3D - 173 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2846 Pvu-Chr8 58459725 58464355 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2846 - - gmx:100818984 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2846 8 58459725 58464355 Pvu8g2846 8 58459725 58464355 ECH
Pvu6g0560 6 16894185 16897792 Pvu8g2846 8 58459725 58464355 PCT