Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0560 ATGAACTGTCAACCAGGTTTTGACAATTTTTCAGTAATCTCCCCTACTTCAGTAATCACACCTGGCACCCCTACTACAACAGCAGGCATCCAGGTTCAATCTCCCTTCTGGGATCCTCAGCCTGCTAACAATACCAATGCAGAATATATGACATTGGGTTATTTGGATTCTATCTCTGAACTTCAAAAGCAAACCCCGTTCTTCAGTCTAGAGAATCACATGGATGCTATAAATTCTCGGGCTGTTGGGACTTCCGGCACTCCTGGAATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTGGTAATTTGGGTGGAAAAGTTGGTAGAAGGTTTGACCATCCAGTCAAGATCTGTCACTACTTTAACAAAGGATTTTGTAAGCATGGAAATAGCTGTAGATACTATCATGGACTAGGGGCCCCTGATGTGTTCTCTCACATGTATGGAAATGATAGTTTGAATGATGATCAGATGATTTCACCTGGGTCACTGGCACAACTAGAGTCAGAAATTGTTGAACTCCTGAAACTGAAAAAGGGTGGTTCTATATCAATTGCTTCCCTTCCAATGGCATACTTTGACAAGTATAAGAAGGTGTTGCAGGCAGATGGCTACCTCACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTCTGACAAAGCTTCTTGCGCGGTTGAAAAATAGCATTCGGCTAATTGACAGGCCTCACGGGCAGCATTCGGTTGTTCTGGCGGAAGATGCTCCCAAGTTCAATGGGAGGGCAGATTATGCTAAATACATCAGTGCATCACGACAAATATACCTGACATTTCCGGCTGACAGCACTTTTAGCGAGATTGATGTTTCAAACTACTTTGGCACTTTTGGGAACGTTGAAGATGTAAGGATTCCAAGCCAAGAAAGAAGGATGTTTGGATTTGTTACATTTGATGATCCTGATACTGTTAAAGCAATTTTGGATAAGGGAAATCCTCATTATGTCTGTGAATCACGGGTTCTTGTGAAACCTTACAAGGAGAAGCCAAAACTTATGCTCAGAAAGCATCCAGATAGAATTGAGCACCCGCACCCTGCTTATTGCTCAGCACACTACGTAGATGTTGACACTGAACCTTCGTCAAGTGAGCATGTTCCAAGAGGTTGCACAAACCCTCGATTTCTGAGGAGGCTGATCATTGAACAGCAAGAGGAGACTGCCCTTGAATTTCAGAGAAGACGTTTTGCAGAGCTGCAATTGGCCCAAAACTCTTTCACCACTTCACCCCATTTTGGCTTTACCACGGACAGATCAAAAGTTTCAGATGATCATTTCAATGTCCATTCCACCCAATCTCACAATCATGTTCTGAATGACAATTACACTGATGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTTCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATGTAG 1455 0.4309 MNCQPGFDNFSVISPTSVITPGTPTTTAGIQVQSPFWDPQPANNTNAEYMTLGYLDSISELQKQTPFFSLENHMDAINSRAVGTSGTPGIANDYYGLDASSAGNLGGKVGRRFDHPVKICHYFNKGFCKHGNSCRYYHGLGAPDVFSHMYGNDSLNDDQMISPGSLAQLESEIVELLKLKKGGSISIASLPMAYFDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGRADYAKYISASRQIYLTFPADSTFSEIDVSNYFGTFGNVEDVRIPSQERRMFGFVTFDDPDTVKAILDKGNPHYVCESRVLVKPYKEKPKLMLRKHPDRIEHPHPAYCSAHYVDVDTEPSSSEHVPRGCTNPRFLRRLIIEQQEETALEFQRRRFAELQLAQNSFTTSPHFGFTTDRSKVSDDHFNVHSTQSHNHVLNDNYTDEDSNQGLNLPDSPFSFPVDSGISAVM* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0560 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 326 IPR000504 GO:0003723
Pvu6g0560 484 Gene3D - 112 172 - -
Pvu6g0560 484 SMART rrm1_1 268 338 IPR000504 GO:0003723
Pvu6g0560 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 484 - -
Pvu6g0560 484 SUPERFAMILY CCCH zinc finger 114 139 IPR036855 GO:0046872
Pvu6g0560 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 118 139 IPR000571 GO:0046872
Pvu6g0560 484 SUPERFAMILY RNA-binding domain, RBD 279 358 IPR035979 GO:0003676
Pvu6g0560 484 CDD RRM_AtC3H46_like 269 338 IPR034365 -
Pvu6g0560 484 ProSiteProfiles Zinc finger C3H1-type profile. 114 141 IPR000571 GO:0046872
Pvu6g0560 484 MobiDBLite consensus disorder prediction 450 469 - -
Pvu6g0560 484 Gene3D - 272 345 IPR012677 -
Pvu6g0560 484 Pfam OST-HTH/LOTUS domain 165 244 IPR025605 -
Pvu6g0560 484 ProSiteProfiles OST-type HTH domain profile. 165 248 IPR025605 -
Pvu6g0560 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 343 IPR000504 GO:0003723
Pvu6g0560 484 MobiDBLite consensus disorder prediction 450 470 - -
Pvu6g0560 484 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 8 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0560 Pvu-Chr6 16894185 16897792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0560 - - var:108341215 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0560 6 16894185 16897792 Pvu6g0560 6 16894185 16897792 ECH
Pvu6g0560 6 16894185 16897792 Pvu8g2846 8 58459725 58464355 PCT