Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2459 ATGGCTCTGTGTTCCTCTGTTTCGCTCTTTCCACTTCTCTTTTCGTTGTTGTTGTTGTTCTCCGCTTCCTCCTCCGCCAACCATGATTCTGTCTCGTTCTCTTTCCCTCTCAGGTCGCTTCCCCTCTCCACAGAGAAGCCTCTGAAGACGAACCCAAAACTGAGAAGCCTTTCCTCTGCCTCGTACAACGTAAAGTGGTCGTTCAAGTACTCGATGGCACTGGTGGTAAGCCTCCCCATAGGGACTCCTCCGCAGCACCAACAAATGGTGCTGGACACGGGAAGCCAACTCTCGTGGATTCAGTGCCACAACAAAACCCCTCCCACGGCGTCGTTTGACCCTTCTCTCTCCTCATCCTTCTACGTCATCCCCTGCACCCACCCTCTCTGCAAACCCCGCGTTCCCGATTTTACCCTCCCCACGACCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACCTTCGCCGAGGGCAACCTCGTCCGAGAAAAACTAACCTTCTCCCCTTCCCAAACAACCCCTCCACTCACCCTCGGCTGCGCCACCGAGTCCAGAGACGCCAGTGGCATTCTCGGAATGAACCTCGGCCGCCTGTCCTTCCCCTCGCAGGCCAAAATCACCAAATTCTCGTACTGTGTCCCCACCCGAAAAACCGGACCCGGAAACGTCCCAACCGGGTCGTTCTACATCGGCAACAACCCCAACTCCGCGCGCTTCCGTTACGTCAACATGTTGACCTTTAGTCAAAGTCAACGTATGCCGAATTTGGACCCGTTGGCCTACACCGTCCCCATGCAGGGAATTAGAATTGGTGGCAAGAGGCTAAACATCAATCCTTCGGTTTTCCGCCCCGACGCTAGCGGGTCGGGTCAGACCATGATCGACTCCGGATCCGAATTCACCTTCCTGGTCGACCAGGCTTACGACAGGGTGCGGGAGGAGGTTGTTAGAGTGGTGGGGCCCAGGCTTAAGAAGGGGTACGTGTACGGCGGGGTCGCGGACATGTGTTTTGACGATTCCGCGAGGGAGACAATCGGACGGCTGCTAGGGGACGTGGTGTTGGAGTTCGAGAAAGGCGTGGAGATCGTGGTTCCGAAGGAGAGGGTGCTGGCTGACGTGGGCGGTGGGGTCCACTGCGTGGGAATCGGCAGGTCGGAAAGATTGGGTGCAGCGAGCAACATCATTGGGAACATCCATCAGCAGAATATGTGGATGGAGTTCGATCTCGCGAATCACAGAGTCGGGTTCGGTGAGGCCGATTGTAGCAGATCGTAG 1290 0.5682 MALCSSVSLFPLLFSLLLLFSASSSANHDSVSFSFPLRSLPLSTEKPLKTNPKLRSLSSASYNVKWSFKYSMALVVSLPIGTPPQHQQMVLDTGSQLSWIQCHNKTPPTASFDPSLSSSFYVIPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTFAEGNLVREKLTFSPSQTTPPLTLGCATESRDASGILGMNLGRLSFPSQAKITKFSYCVPTRKTGPGNVPTGSFYIGNNPNSARFRYVNMLTFSQSQRMPNLDPLAYTVPMQGIRIGGKRLNINPSVFRPDASGSGQTMIDSGSEFTFLVDQAYDRVREEVVRVVGPRLKKGYVYGGVADMCFDDSARETIGRLLGDVVLEFEKGVEIVVPKERVLADVGGGVHCVGIGRSERLGAASNIIGNIHQQNMWMEFDLANHRVGFGEADCSRS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2459 429 CDD pepsin_A_like_plant 75 426 IPR034161 -
Pvu8g2459 429 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Pvu8g2459 429 PRINTS Pepsin (A1) aspartic protease family signature 297 308 IPR001461 GO:0004190|GO:0006508
Pvu8g2459 429 PRINTS Pepsin (A1) aspartic protease family signature 398 413 IPR001461 GO:0004190|GO:0006508
Pvu8g2459 429 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 429 - -
Pvu8g2459 429 Pfam Xylanase inhibitor N-terminal 75 228 IPR032861 -
Pvu8g2459 429 ProSiteProfiles Peptidase family A1 domain profile. 74 422 IPR033121 -
Pvu8g2459 429 Gene3D Acid Proteases 233 429 IPR021109 -
Pvu8g2459 429 PANTHER ASPARTYL PROTEASE-RELATED 13 429 IPR001461 GO:0004190|GO:0006508
Pvu8g2459 429 Pfam Xylanase inhibitor C-terminal 265 422 IPR032799 -
Pvu8g2459 429 Gene3D Acid Proteases 57 232 IPR021109 -
Pvu8g2459 429 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 89 100 IPR001969 GO:0004190|GO:0006508
Pvu8g2459 429 SUPERFAMILY Acid proteases 75 427 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2459 Pvu-Chr8 55167447 55169178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2459 76 428 Miscellaneous Gene Families AT1G44130 22.335 1.06e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2459 - - gmx:100790706 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2459 8 55167447 55169178 Pvu8g2459 8 55167447 55169178 ECH
Pvu1g2370 1 49016359 49018204 Pvu8g2459 8 55167447 55169178 PCT