Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2402 ATGGCTCAATGCTCTAACAAGGATATTGACACAAGTGCATCTCAATTAAGTTGGTGGTATGTAGATATATCTTATCAAGAACTCAAAAAGGGAAGTTACAAAGTGAAAAGCTCAGATGAAACTTTCATTTGTCCATACTGTCCTGAGAGAAAACAGGATTATAAGTATAGGGAACTCCTTAATCATGCTTCTGGGGTTGGTCGGAGTAGTTCAGGAAAGAGAACTGCAAAAGAGAAGGCTAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTTGCTTATCTGGATGGCCCATCAAAACCTGCAGATAAAGGTGTCAAATCATTTAGCCCAGGAGAAACTGTAATGTCTCAGTGCTCTAACAAGGATACTGATACATCTCAAATAAGTTGGTGGTATGTAGATACATCTTACGAAGAACTTAAGAAGGGAAGTTACAATGTGAAAACCTCAGATGTGACTTTCATCTGTCCCTACTGCCCTAGGAGAAAACAAGATTATTTGTACAGGGAACTCCTAGAGCATGCGTATATGGTGGGTCGGAGTAGTTCTGAAAAGAGAAGTGCCAGAGAGAGAGCCAATCATCTTGCATTAGTGAAATATTTGGAAAATGATCTTATTATTATGGATGGCCTGTCAGAACCTGTTGATAAAGGTACCAAATTAAGCTTAGGACAACCTGAAATAGCTCAGTGCTCTAACAAGGAGACTGGTATGAGTGCATCTCCTCCAATAAACTGGTGGTATGTAGATAAGTTTTACAAAGAACTCAAAAAGGGAAATCACATTGTCCAAACCTCAGAAGAGACTTTTTCTTGTCCATACTGCCCTAAAAAGAGAAAACAGGATTATGTGTACAGGGAACTTCTTGACCATGCTTCTGGGGTGGGTCAGAGTAGTTCACAAAAGAGAAGTGTCAGAGAGAAGGCTACTCATCTGGCCTTAATGAAATATTTAAAAAATGATCTTATGCATATGAATGATCCATCAAAATCGGTAAATGAAGGTAACCCCCCAGTTACCATAGTGAATCAGAGTAATTCAGAAGAAAGAAGTGTCAGAGAAGATGCTACTCATCTGGCTTTAGGGAAAGACTTGAAAAGGGATCTCACAAATGTGAGTGGTTCATCATCAAAACCTGTAAATGAAGGAACCATAATAATAAGCCCTGGAGAAACGGCAATTGGTTGCTCTGACAAAGATAGCAATATGAGTTCATCTCAGATTGGGCGCTATGTAGATAAATTTTATGAAGAACTCAAAAAGGGGAGACACTGTGTGAAAACCTCGGATGAGACTTTCACATGCCCATACTGCCCTAATAAAAAGTTAAATCGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGATCACAAAAAAGAAGTTTCTTTGAAAGGGCTAATCATCTGGCTTTAGAAAAGTATTTGAAAAAGGATGTTATGAATGTGGGTGCTTCATTTCCATCAAAACCTATGGATCAAGGCACAACAACAGCAACCCCAGGAGAAACTGTAATGGGTCACTACTCTCAAAAAGATAATAATATAAGCGCAACTCAAATAAGTGGGTGGTATGTACATAAATCCTATGAAGCACTCAAAAAGGTAAGTCACATTGTGAAAACCTCTGAAATGACTTTCGCATGTCCATACTGCCCTAATAAAAAGAGAAAGAGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGCTCACAAAAGAGAAGTGCCACTGAAAAGGCTAATCATCTGGCTTTAATGAAATATTTGCAAAAGGATCTTATGAATGTGGATGGTCCACCAATAACTGTGGATGAAGGCAATGCTGAGGAGCAGTTTGTGTGGCCATGGGCTGGGATATTGGTTAATATTCCTACTAGACAGACAGAAGATGGACGTGTTGGGGGAAGTGGTTCCAAGCTAAGGGATGAACACCGAAGCAGGGGATTTAATCCTTGTAGAGTGCGCACTTTATCAGATGTCTGTGGTCACTCTGGAACTGCAGTTATGGAATTCAATAAAGATTGGACGGGTTTAGATAATGCTTTGGCATTTGAGAGAGCATATGAATTAGATCATCACGGGAAAAAGGACTGGTTTTCTAATACTGAGCAAAAGTCTGGTATTTATGCATGGATTGCTCGAGCTGATGACTACAAGATGAACAATATCATTGGGGAACAACTACAGAAGATGGGGGATATCCAAACAATATCTGAGCTCATGAAAGAAGAAGCTCGAATACATGGTAAACTCGTCTCCTGCTTGAATAATACTATTCAGGTCAAGAAGAAGCGGTTAATGGAGATGGAAGAAAAATACAATGAGACTTCACGTCACATGGAAATTGTAATGGGAGAAATCGATAAGCTCACTCAAGATCACAATCAAGAGATGAAGAAAATACAGTCAAGTGCAACTCAGCACTTCCAGAATATTTTTAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAAGAGAGTTTGAGTTGCGGAGAATTGAACTGGAAAAACGTGAAGCACATAACGAAAGCGAAAGAAAGAAGTTAGAAGAAGAGATTATGGAGAATGCATTGAAAAATAGCGCTATGGAAATGGCTGTTCTGGAGCAACAGAAAGCTGGTGTAAATGTTTGGAAACTGGCTGCAGATCAAAAGCGGCAAAAAGAACAACTTCGTCATAAAATCATCAGGCTTGAAAAACAACTGGAGGTGAAACAAAAACTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAATGTCATGCAATACATCGAAGATGATGGAGACTCAGAAGTTCTGAATACGGTGAATGTCTTACACAAGGATTTAAGAGAGAAGGAACAGTCACTACGAGACGTAGATGCCCTGAACCAAACACTAATTATTAAAGAGCGTCAGAGCAATGATGAGCTACAGGAAGCTCGAAAAGAATTGATTAATGGCATTAAAGAGATATCTTGCCGTGCTAGTGTTGGAGTGAAGAGAATGGGGGAGCTTGATATTAGACCATTCCTTGAAGCTATGAAGAAAAAATACAATGTTGAGGATGCAGAAGATAGAGCTTCAGAACTGTGTTCATTGTGGGAAGAGTATATAAAGGACCCAGAATGGCATCCATTTAAAATTACCGTAATTGAAGGGAAAGAACAGGAAATCATAGACAATGAAGATGAAAAGTTGAAAGCACTGCAAAATGAGTTGGGTGCAGGAGTCTACCAAGCTGTGGTGACAGCTGTGACAGAGATCAATACATATAATCCAAGTGGGAGGTATACAACCTCTGAATTATGGAATTACGAAGAGGGAAAGAGAGCTACCTTGCAAGAAGGAGTAAAATTGTTATTGATGCAATGGAAACTATCTAAACAGAAAAGAGGGACGGCGTAA 3441 0.3944 MAQCSNKDIDTSASQLSWWYVDISYQELKKGSYKVKSSDETFICPYCPERKQDYKYRELLNHASGVGRSSSGKRTAKEKANHLALVKYLEKDLAYLDGPSKPADKGVKSFSPGETVMSQCSNKDTDTSQISWWYVDTSYEELKKGSYNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKRSARERANHLALVKYLENDLIIMDGLSEPVDKGTKLSLGQPEIAQCSNKETGMSASPPINWWYVDKFYKELKKGNHIVQTSEETFSCPYCPKKRKQDYVYRELLDHASGVGQSSSQKRSVREKATHLALMKYLKNDLMHMNDPSKSVNEGNPPVTIVNQSNSEERSVREDATHLALGKDLKRDLTNVSGSSSKPVNEGTIIISPGETAIGCSDKDSNMSSSQIGRYVDKFYEELKKGRHCVKTSDETFTCPYCPNKKLNRDYVYREILEHASGVGQSRSQKRSFFERANHLALEKYLKKDVMNVGASFPSKPMDQGTTTATPGETVMGHYSQKDNNISATQISGWYVHKSYEALKKVSHIVKTSEMTFACPYCPNKKRKRDYVYREILEHASGVGQSSSQKRSATEKANHLALMKYLQKDLMNVDGPPITVDEGNAEEQFVWPWAGILVNIPTRQTEDGRVGGSGSKLRDEHRSRGFNPCRVRTLSDVCGHSGTAVMEFNKDWTGLDNALAFERAYELDHHGKKDWFSNTEQKSGIYAWIARADDYKMNNIIGEQLQKMGDIQTISELMKEEARIHGKLVSCLNNTIQVKKKRLMEMEEKYNETSRHMEIVMGEIDKLTQDHNQEMKKIQSSATQHFQNIFNGHERLKLQLESQKREFELRRIELEKREAHNESERKKLEEEIMENALKNSAMEMAVLEQQKAGVNVWKLAADQKRQKEQLRHKIIRLEKQLEVKQKLELEIQQLKGKLNVMQYIEDDGDSEVLNTVNVLHKDLREKEQSLRDVDALNQTLIIKERQSNDELQEARKELINGIKEISCRASVGVKRMGELDIRPFLEAMKKKYNVEDAEDRASELCSLWEEYIKDPEWHPFKITVIEGKEQEIIDNEDEKLKALQNELGAGVYQAVVTAVTEINTYNPSGRYTTSELWNYEEGKRATLQEGVKLLLMQWKLSKQKRGTA* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2402 1146 Pfam XS domain 624 734 IPR005380 GO:0031047
Pvu8g2402 1146 Coils Coil 835 888 - -
Pvu8g2402 1146 Pfam XH domain 1012 1142 IPR005379 -
Pvu8g2402 1146 CDD RRM_like_XS 627 733 IPR005380 GO:0031047
Pvu8g2402 1146 Coils Coil 975 1006 - -
Pvu8g2402 1146 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Pvu8g2402 1146 Pfam XS zinc finger domain 557 600 IPR005381 GO:0031047
Pvu8g2402 1146 Pfam XS zinc finger domain 274 316 IPR005381 GO:0031047
Pvu8g2402 1146 Pfam XS zinc finger domain 437 480 IPR005381 GO:0031047
Pvu8g2402 1146 Pfam XS zinc finger domain 158 200 IPR005381 GO:0031047
Pvu8g2402 1146 Gene3D XS domain 620 789 IPR038588 -
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 280 343 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 117 165 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 398 444 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 564 1145 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 514 563 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 164 221 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 231 281 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 50 110 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER RIBONUCLEASE P SUBUNIT P38 446 502 IPR045177 GO:0080188
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 280 343 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 398 444 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 164 221 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 564 1145 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 446 502 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 110 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 231 281 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 514 563 - -
Pvu8g2402 1146 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 117 165 - -
Pvu8g2402 1146 Coils Coil 1064 1084 - -
Pvu8g2402 1146 Coils Coil 898 942 - -
Pvu8g2402 1146 Coils Coil 767 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2402 Pvu-Chr8 54677949 54684882 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2402 - - gmx:100790814 1978.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2402 8 54677949 54684882 Pvu8g2402 8 54677949 54684882 ECH
Pvu1g2402 1 49324711 49331021 Pvu8g2402 8 54677949 54684882 PCT