Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2402 ATGGCTCAAAGCAGCTCTGATGAGGATACTGATATTAGTGAATCTGAAATTAGTGAGTACGAAGATAAATCCTATGAAGAACTTAAAAGTGGAAGTCAGAATTTGAAAACACCGGATGAGACTTTCACTTGTCCGTACTGCCCTAAAAAGAGAAAACGGGATTATTTGTACAAGGAGCTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTAGCTCACAAAAGAGGAAAGCTAGAGACAAGGCTAATCATTTGGCTTTAGTGAAATATTTAGAAAATGATCTCATGAATGTAGATGTTCCATCAAATAATTCAAAACCGGTAGATGAAAGTGATTCTTCTGTTAATTCTAATGATCAGTTTGTGTGGCCTTGGGTTGGAATTGTAGTTAATATTCCTACTAGACGGACAGAAGATGGACGCTGTGTTGGAGAGAGCGGTTCCAGGCTGAGGGATGAGTACAGGATCAGGGGTTTCAACCCAGTTCGAGTCAATCCTTTGTGGAATTTTCGGGGTCATTCTGGAACTGCTCTTGTAGAATTCAATAAAAACTGGCCAGGCTTAGATAATGCAATGGCATTTGAAAGAGCGTATGAATTAGATCATCATGGGAAAAAAGATTGGTTTTCTAATTGTGGGCAGAAGTCTGGTCTTTATGGATGGGTTGCCCGAGCCGATGACTACAACATGAACAACATCTATGGAGAATATCTGCGGAAGATGGGTGATGTCAAAACCATATCTGAGCTTATGGAAGAAGAAGCTCGAAGGCAAGATAAACTTGTCTCCAATTTGAATAACATTATTCAGGTCAAGAACAACCACATAAAAGAGATTAAAGTGAGATACGATGAAACTACTGACAAAATGAACCTTGCTATGATGGAAAAAGATAAACTCAGTCAAGCTTATAATGAAGAGATACAGAAAATGTGGTCAAGTGCCAGGGATCACTGCCACAAGATTTTTACTGATCACGAAAAGCTTAAAATGCAACTGGAATCTCAGAAAAATGAGCTTGAATTACGGAAAATTCAATTAGAAAAACGTGAGGCACATAATGAAAGTGAAAGAAAAAAGTTGGCAGAAGAAATCGAGGAGAATGCAACAAAAAATAGTTCTCTTCAGATGGCTACTCTTGAGCAAAAGAAATCAGACGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAGCAACTCCATGCTAAAATCATTCAGCTTCAGAAACAACTTGATATGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGATCTTTAAGTGTATTGAAGCACATGGAAGATGACGAAGATGTTGAAATTCTGAAGAAAGTAGATAATTTACAAAAGGATTTAAGAGACAAGGAACAATCACTTGAAGACATTGAATCACTTAATCAAACACTAATAATTAAAGAGCGTAAGAGTAATGATGAGCTGCAGGATGCCCGACAAGCATTGGTTGATGGAGTTAAAGAGTTACCATCTCATGGAAATGTTCGTTTAAAGAGAATGGGGGAACTTGACAGTAGACCATTCCTTGAAGCAATGAAAAAAAAGTACAATGAAGAGGATGCTGAAGAGAGAGCTTCAGAACTGTGCTCGTTGTGGGAAGAGTATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCATGGATGCTAATGGGAAAGAAAAGGAAATTATTAAGAATGACGATGAAAAGCTGAACGGGTTGAAAGAAGAGCTGGGTGAAGGTGCATATAAAGCAGTGGTGGAGGCATTGTCAGAAATAAATGAACATAATCCTAGTGGCCGGTACTTAACCTCGGTATTATGGAACTATAAACAAGGAAGGAGAGCTACTCTTAAAGAAGGAATACAATTTCTGTTGAATCATTGGAAAGTTCTTAAACGCAAGAGGGGAATGATGTGA 1926 0.3837 MAQSSSDEDTDISESEISEYEDKSYEELKSGSQNLKTPDETFTCPYCPKKRKRDYLYKELLQHASGVGQSSSQKRKARDKANHLALVKYLENDLMNVDVPSNNSKPVDESDSSVNSNDQFVWPWVGIVVNIPTRRTEDGRCVGESGSRLRDEYRIRGFNPVRVNPLWNFRGHSGTALVEFNKNWPGLDNAMAFERAYELDHHGKKDWFSNCGQKSGLYGWVARADDYNMNNIYGEYLRKMGDVKTISELMEEEARRQDKLVSNLNNIIQVKNNHIKEIKVRYDETTDKMNLAMMEKDKLSQAYNEEIQKMWSSARDHCHKIFTDHEKLKMQLESQKNELELRKIQLEKREAHNESERKKLAEEIEENATKNSSLQMATLEQKKSDENVMKLAEDQKRQKEQLHAKIIQLQKQLDMKQELELEIQQLKGSLSVLKHMEDDEDVEILKKVDNLQKDLRDKEQSLEDIESLNQTLIIKERKSNDELQDARQALVDGVKELPSHGNVRLKRMGELDSRPFLEAMKKKYNEEDAEERASELCSLWEEYLKDPDWHPFKVIMDANGKEKEIIKNDDEKLNGLKEELGEGAYKAVVEALSEINEHNPSGRYLTSVLWNYKQGRRATLKEGIQFLLNHWKVLKRKRGMM* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2402 641 Pfam XS zinc finger domain 44 87 IPR005381 GO:0031047
Pvu1g2402 641 Pfam XS domain 118 228 IPR005380 GO:0031047
Pvu1g2402 641 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 5 49 - -
Pvu1g2402 641 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 641 - -
Pvu1g2402 641 Coils Coil 392 436 - -
Pvu1g2402 641 CDD RRM_like_XS 120 227 IPR005380 GO:0031047
Pvu1g2402 641 PANTHER RIBONUCLEASE P SUBUNIT P38 5 49 IPR045177 GO:0080188
Pvu1g2402 641 PANTHER RIBONUCLEASE P SUBUNIT P38 50 641 IPR045177 GO:0080188
Pvu1g2402 641 Coils Coil 322 366 - -
Pvu1g2402 641 Coils Coil 448 468 - -
Pvu1g2402 641 MobiDBLite consensus disorder prediction 1 43 - -
Pvu1g2402 641 Gene3D XS domain 112 282 IPR038588 -
Pvu1g2402 641 Pfam XH domain 506 637 IPR005379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2402 Pvu-Chr1 49324711 49331021 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2402 - - gmx:102665742 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2402 1 49324711 49331021 Pvu1g2402 1 49324711 49331021 ECH
Pvu1g2402 1 49324711 49331021 Pvu8g2402 8 54677949 54684882 PCT