Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2399 ATGCCTTTTATTTCCAACATTCAGCGTCAAACCGATTTCAACCTCGTCGATTCCAACACTCCCATTGTGATAGACAATGGTGCCTCCTATTTCCGCATAGGTTGGGCGGGAGAGCCTGAACCTCGTGTTATTTTTCGCAACATTGTGCAAAGGCCACGCCATAAAGTAACCGGGGAAACTGTCACCATTGTGGGTGACCATGATCCCGCCTTACTGAAATACTTCGACTGCACTCGCTCTGGGCCACGTTCTGCATTTGACAGTAATGTTGTGTACCAGTTTGAAACGATGGAATATATTCTTGATTTTGGATTTGACCGGATGGGTGCAACTACTGAGATTGATCATCCTGTCCTGATCACCGAATGTGTATGCAACCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTACGGAGTTCCATCAATTGCTTTTGGTGTTGATGTGGCATTCAGCTATAAATACAATCAACAACAAGGAGTGTGTGCTAAAGATGGTCTTGCTCTGTGTCCTGGATTCAACACAACCCATGTGATTCCGTTTGTAGACGGGGAGCCTGTGTATGAAGGATGCTGTCGTACTAATATTGGTGGATTCCATGTGACTAATCATTTGAAGCAACTCCTTTCACTTAAATATCCGTATCATTTGACTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACCAGATTATGCCTCGGAAGCTAGGTTGTTTCAGAAAGAACCTGAGCAAGCTGAAGGAAAAACCAGATGTTGGGAACTCCCTTGGGTTCCACCCCCAACTGATGAGCCTCCTTCTGAGGAAGAGATCGCAAGAAAGGCAGCAATTAAAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCTGAGGCAAAGAGGTCTTCTAAAATTAATGAACTGGAAAATGAATTGCATGGTTTAGAGTTTCTTTTGCATCAGCTTGAACAAGTGGAAGAGAGTGAGGTTCTACCATTCCTGTCAGAAACTGGCTATGTCAATAGGCAGGAGATAGAGTCTGCACGTAATAAAGTTATACAATCATTACGGAAAGCAAAAGGTGAACCAAAGAATGAGCAAGCTGAAACTGAAAAGGAGGATCTTGGCACTAGTGAGAAGTATTCTCTTATAAACATTCCTGATGACATGTTGACTGGAGAACAGCTCAATGAAAAGAAGAAACAGTTGTCACTCAAATCTATGGCTGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGAGAGAGAAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCGGACCTATATTTGGAGCAATTGCATGCTAGATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAACGACTTAAGACAAACGGAGGCCATTCAAATGGAAATAGTTTGTCCGGTGGTATTGGCCGTGGTGAAAGACTGAATGCTGCTCAGAGGGAAAGAATGCGTCTCCTGACAACTGCAGCTTTAGACCGTGGTAAGGGTGAAGATACATTTGGTGCTAGAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAAAGATTATGGTAACGATGATGATGAAGAACCAGATGAAGATGAAACAGAGCTGACCCGCATCTCTTCTAGGCTACAGGACCTGGATCCAACATTTATACCTAAGTTAGATGCCGGTACCAGTCAACCTGCTGAGGTGCCACGGGTTCGTCCTCTTACCAAAGAAGATTTTAAGATTGTTATTGGGGTCGAAAGATTCAGATGTCCTGAAATATTATTTAATCCAAACTGGATCGGGGTTGATCAGGTAGGATTAGACGAGATGGCTGGGGTCTCAATAAGGAGGTTACCAGTCAAGGATGAAACCTTGGAACAGAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGCCTGGAATCTGGAATTCGGATGATTAGACCATGTGGCTCACCTATAAAAATAGTGAGGGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCAGCTACCTTCGCCTCAGACTCACAGTTCCATATGCAAACTTTCAGTAGACTGGATTATTATGAAAAAGGTGAAGACTGGCTTCGCAATTATCAACTGCGGTATACATTGTAA 2169 0.4338 MPFISNIQRQTDFNLVDSNTPIVIDNGASYFRIGWAGEPEPRVIFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFETMEYILDFGFDRMGATTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAFSYKYNQQQGVCAKDGLALCPGFNTTHVIPFVDGEPVYEGCCRTNIGGFHVTNHLKQLLSLKYPYHLTRFTWEKVEDLKMEHCYIAPDYASEARLFQKEPEQAEGKTRCWELPWVPPPTDEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVEESEVLPFLSETGYVNRQEIESARNKVIQSLRKAKGEPKNEQAETEKEDLGTSEKYSLINIPDDMLTGEQLNEKKKQLSLKSMADGRQRLKQKRYEEELERERKQQLEEEKRLENPDLYLEQLHARYKDLSERVDQQKRLKTNGGHSNGNSLSGGIGRGERLNAAQRERMRLLTTAALDRGKGEDTFGARDEDWQLYKLMSKDYGNDDDEEPDEDETELTRISSRLQDLDPTFIPKLDAGTSQPAEVPRVRPLTKEDFKIVIGVERFRCPEILFNPNWIGVDQVGLDEMAGVSIRRLPVKDETLEQRLTSSILVTGGSSLFPGIVERLESGIRMIRPCGSPIKIVRALDPVMDAWRGAATFASDSQFHMQTFSRLDYYEKGEDWLRNYQLRYTL* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2399 722 MobiDBLite consensus disorder prediction 467 486 - -
Pvu8g2399 722 PANTHER ACTIN-RELATED PROTEIN 5 18 714 IPR027664 -
Pvu8g2399 722 SUPERFAMILY Actin-like ATPase domain 169 715 IPR043129 -
Pvu8g2399 722 MobiDBLite consensus disorder prediction 359 381 - -
Pvu8g2399 722 Gene3D - 151 205 - -
Pvu8g2399 722 CDD NBD_sugar-kinase_HSP70_actin 22 201 - -
Pvu8g2399 722 Pfam Actin 17 267 IPR004000 -
Pvu8g2399 722 Pfam Actin 587 714 IPR004000 -
Pvu8g2399 722 SUPERFAMILY Actin-like ATPase domain 17 157 IPR043129 -
Pvu8g2399 722 Gene3D Actin; Chain A, domain 4 518 611 - -
Pvu8g2399 722 MobiDBLite consensus disorder prediction 404 425 - -
Pvu8g2399 722 SMART actin_3 19 719 IPR004000 -
Pvu8g2399 722 Coils Coil 418 444 - -
Pvu8g2399 722 Coils Coil 448 468 - -
Pvu8g2399 722 Gene3D - 22 149 - -
Pvu8g2399 722 Gene3D - 682 710 - -
Pvu8g2399 722 Gene3D Actin; Chain A, domain 2 49 85 - -
Pvu8g2399 722 Gene3D Actin; Chain A, domain 4 206 257 - -
Pvu8g2399 722 Gene3D - 612 681 - -
Pvu8g2399 722 Coils Coil 308 328 - -
Pvu8g2399 722 MobiDBLite consensus disorder prediction 359 382 - -
Pvu8g2399 722 PANTHER ACTIN 18 714 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2399 Pvu-Chr8 54654374 54661590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2399 588 709 Miscellaneous Gene Families AT2G42100 34.426 2.42e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2399 K11672 - gmx:100804305 1250.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2399 8 54654374 54661590 Pvu8g2399 8 54654374 54661590 ECH
Pvu1g2407 1 49379889 49385767 Pvu8g2399 8 54654374 54661590 PCT