Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2407 ATGTCTGTTACTTATGTTGTTCACCATTTGCAAAGTTTTTCAAGTTGCAAGAACACTCAGAATCGAGGTCACTTCTTCTTCTTCTATGTCACTTACACAATGCCCTTCATCTCCAAAATTCAGCGCCAATCTGATTACACCCTTTTCAGCTCTGCCACTCCCATTGTCATCGACAATGGTGCTTCCTACTTCCGTATTGGATGGGCAGGAGAGACTCAACCACGTGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCCACAAAGCCACTGGAGAAATTGTCACTGTTGTTGGTGACCATGATCCAGCATTAATGAAATACTTTGACTGTAGTCGCTCTGGACCCCGCTCAGCGTTTGACAGCAATGTAGTTTACCAATTTGAAATGATGGAATATATTTTGGACTTTGGATTTGATCGGTTGGGAGCAACAGGCTCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAATTCAGTCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACATATGGAGTTCCTTCTATAGCCTTTGGTGTTGATGCAGCATTCAGCTATAAATATAATCAACAACATGGTGTTTGTGATAAAGATGGTCTTGCTTTGTGTCCTGGATTCAATACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCAATATATAAAGGATGTTGCCGAACCAATGTTGGTGGGTTCCATGTGACTGACTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGACGACCTGAAGATGGAGCATTGTTATATTGCACCAGATTATGCTTCTGAAGCTCGACTGTTTCAGAAAAAATCTAATGAGGCTAAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCTACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCTAGAAAGGCAGCAATAAGAGAGAGACAGGGTCAAAGATTACGAGAAATGGCTGAGGCAAAGAGGTCCTCTAGAATAAACGAATTCGAAAATGAATTGCATGGTTTGGAATTTCTTCTAAAACAGCTTGAACAAGTTGAAGACAATGATATTCCATCTTTCCTAGCAGAGACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCACTAAAGTTACTCAATCTTTACGTAAAGCAAAAGGTGAACGAAAGAGTGAACAAGCTGAAAGTGAGAAGGCTGACTCTGCCACTAATGAAAAGTATTCTCTTATAAACATCCCTGATGACATGCTCTCCCCTGAACAGCTAGCTGAAAAAAAGAAACAGTTGTCACTGAAATCCATGTCAGATGGACGACAACGATTGAAGCAGAAGCGTTATCAAGAGGAATTGGAGCGAGAAAGGAAACAACAGTTAGAGGAGGAAAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAGTACAAAGACCTCTCAGAGAAAGTTGAGCAGCGAAAACGGCTCAAGACAAATGGAGATCATTCTAATGGAAATAACTTGTCTGGTGGCATTGGTCGTGGGGAGAGACTCCATGCTGCTCAGAGGGAGAGAATGCGCCTCTTAACTACTGCTGCCTTCGATCGTGGTAAGGGCGAAGATACATTTGGTGCCAAAGATGAAGATTGGCAACTGTACAAATTGATGAGCAAAGATGATGATGGTGACGAGGGAGCAGATGAGAATGACACTGAGCTAGCTCGCATCTCTTCCAAGCTACAGGAGTTGGATCCAACTTTTGTGCCCAAGTCAGAAACTGGTAGCTCTCAATCTGCTGAGGCATCACGTCCCCGTCCTCTAACCAAAGAAGATTTTCAAATTGCTTTTGGTGTTGAAAGGTTTAGATGCCCTGAAATCTTGTTCAATCCAAACTGGATCGCAGTTGATCAAGCAGGGTTAGATGAGATGGCTGGGGTCTCAATAAGAAGATTATCATGTAAGGATGAAGGCCTAGAAGAGAGACTCACTAACTCCATACTTGTGACTGGTGGAAGTTCTATTTTCCCCGGCATCATTGAACGCCTTGAAGCCGGAATTAGGATGATTCGACCATGTGGATCACCCATTAAAGTAGTTAGAGCATTGGATCCTGTTATGGATGCATGGCGTGGGGCTGCTGCATATGCAACAACCCCACTATTCCATACCCAAACCTTCAGTAGGATGGACTATTTTGAAAAGGGTGAAGACTGGCTCCGGAGTTATCAACTCAAATATTCATTGTAA 2265 0.4309 MSVTYVVHHLQSFSSCKNTQNRGHFFFFYVTYTMPFISKIQRQSDYTLFSSATPIVIDNGASYFRIGWAGETQPRVVFRNIVQRPRHKATGEIVTVVGDHDPALMKYFDCSRSGPRSAFDSNVVYQFEMMEYILDFGFDRLGATGSEIDHPVLITECVCNPIQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQHGVCDKDGLALCPGFNTTHVIPFVDGEPIYKGCCRTNVGGFHVTDYLKQLLSLKYPYHMARFTWEKVDDLKMEHCYIAPDYASEARLFQKKSNEAKEKTRCWQLPWVPPPTEEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINEFENELHGLEFLLKQLEQVEDNDIPSFLAETGYVSRQEIESARTKVTQSLRKAKGERKSEQAESEKADSATNEKYSLINIPDDMLSPEQLAEKKKQLSLKSMSDGRQRLKQKRYQEELERERKQQLEEEKRLENPELYLEQLRAKYKDLSEKVEQRKRLKTNGDHSNGNNLSGGIGRGERLHAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDDDGDEGADENDTELARISSKLQELDPTFVPKSETGSSQSAEASRPRPLTKEDFQIAFGVERFRCPEILFNPNWIAVDQAGLDEMAGVSIRRLSCKDEGLEERLTNSILVTGGSSIFPGIIERLEAGIRMIRPCGSPIKVVRALDPVMDAWRGAAAYATTPLFHTQTFSRMDYFEKGEDWLRSYQLKYSL* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2407 754 MobiDBLite consensus disorder prediction 497 520 - -
Pvu1g2407 754 Coils Coil 452 478 - -
Pvu1g2407 754 SMART actin_3 52 750 IPR004000 -
Pvu1g2407 754 MobiDBLite consensus disorder prediction 594 609 - -
Pvu1g2407 754 Gene3D - 714 742 - -
Pvu1g2407 754 Gene3D - 644 713 - -
Pvu1g2407 754 Coils Coil 342 362 - -
Pvu1g2407 754 Pfam Actin 52 396 IPR004000 -
Pvu1g2407 754 Pfam Actin 619 746 IPR004000 -
Pvu1g2407 754 PANTHER ACTIN-RELATED PROTEIN 5 45 746 IPR027664 -
Pvu1g2407 754 SUPERFAMILY Actin-like ATPase domain 204 747 IPR043129 -
Pvu1g2407 754 MobiDBLite consensus disorder prediction 584 612 - -
Pvu1g2407 754 CDD NBD_sugar-kinase_HSP70_actin 55 235 - -
Pvu1g2407 754 MobiDBLite consensus disorder prediction 388 413 - -
Pvu1g2407 754 PANTHER ACTIN 45 746 IPR004000 -
Pvu1g2407 754 MobiDBLite consensus disorder prediction 382 419 - -
Pvu1g2407 754 Gene3D Actin; Chain A, domain 4 579 643 - -
Pvu1g2407 754 Coils Coil 482 502 - -
Pvu1g2407 754 SUPERFAMILY Actin-like ATPase domain 52 192 IPR043129 -
Pvu1g2407 754 Gene3D - 207 235 - -
Pvu1g2407 754 Gene3D - 51 202 - -
Pvu1g2407 754 MobiDBLite consensus disorder prediction 434 459 - -
Pvu1g2407 754 Gene3D Actin; Chain A, domain 4 236 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2407 Pvu-Chr1 49379889 49385767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2407 620 741 Miscellaneous Gene Families AT2G42100 32.787 3.54e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2407 K11672 - gmx:100808396 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2407 1 49379889 49385767 Pvu1g2407 1 49379889 49385767 ECH
Pvu1g2407 1 49379889 49385767 Pvu8g2399 8 54654374 54661590 PCT