Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2386 ATGGGCATGAATAATGGCGAGGGAAGTGAAGGAGGGGCGTTGCAGAGGGTGCTTTATATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACTCCCGTCGCCGTTAGGTTTCCGCCGTGTTGTTACTCTTGGAAGGATGTTTGCGGCGGTGGTTGTGGATTCGCTATTGCTATCTCTGAATCAGGGAAGCTCATCACGTGGGGCTCGACAGATGATTTAGGCCAAAGCTATCTGACTTCTGGCAAGCACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGCCTCTATTGTACAAGCTGCAGCAGGGTGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAGGGTATTTGGTGAACCATCGACAGGGATAAGTCTTGAAAAAGATGTGTCAGGAAGGCATAGTCAATCATCGATAGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAATAACAGTGGAGAAGAAAGTACAAAGCGAAGGAGAGTATCTGCAGCAAAGCAAACACCTGAAAGCTCATCATCCACCGACGATAGTCTGACAGCGGTTCCGTGTCTTGTCACACTAAATCCAGGAATAAAGATAGCTAGTGTTGCTGCCGGTGGACGCCATACACTTGCATTGTCAGATACAGGACTGGTGTGGGCTTGGGGCTATGGAGATAGATCTGCTACACTGGTTCGAGGAAGCATGGGTTCAGAGGGACAAAGTTTTAGAGTTCCTGGAAGTTACATAAAGAGAATTGCCTGTGGAGGTCGACACAGTGCAGTAATTACAGATGCTGGAGCATTGCTTACTTTTGGTTGGGGACTCCATGGACAGTGTGGGCAAGGAACTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCACATAGAGGGAGTTGCTGCAGGACTGTGGCATACAGTCTGTATATCTGCTGATGGTGATGTGTATTCATTTGGTGGTAATCAGTTTGGGCAGCTAGGAACTGGTGCTGATCAAGCTGAGACTCTACCAAGATTAGTGGATTCTCCGAGTTTGGAAAATATGCGTGCACAGAATATATCGTGTGGTGCTCGTCACACTGCTTTAATAACAGAGGGTGGAAGAGTTTTCTGCTGGGGTTGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACGTTCCTACTGAAGTCACCATTGAAGGCTGTGTTCCTAAAAATGTTGCTTGTGGTTGGTGGCATACACTTCTTCTGGCCGAGTCCCCCACCTGA 1344 0.4881 MGMNNGEGSEGGALQRVLYMWGYLPGALPQRTPLLTPVAVRFPPCCYSWKDVCGGGCGFAIAISESGKLITWGSTDDLGQSYLTSGKHGETPEPFPLPTEASIVQAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGISLEKDVSGRHSQSSIEQVSPRSQGSRSTGGTASNNSGEESTKRRRVSAAKQTPESSSSTDDSLTAVPCLVTLNPGIKIASVAAGGRHTLALSDTGLVWAWGYGDRSATLVRGSMGSEGQSFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLHGQCGQGTTDDELSPTCVSSLLGIHIEGVAAGLWHTVCISADGDVYSFGGNQFGQLGTGADQAETLPRLVDSPSLENMRAQNISCGARHTALITEGGRVFCWGWNKYGQLGLGDVIDRNVPTEVTIEGCVPKNVACGWWHTLLLAESPT* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2386 447 MobiDBLite consensus disorder prediction 148 181 - -
Pvu8g2386 447 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 327 337 IPR000408 -
Pvu8g2386 447 MobiDBLite consensus disorder prediction 142 206 - -
Pvu8g2386 447 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 341 394 IPR000408 -
Pvu8g2386 447 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 67 119 IPR000408 -
Pvu8g2386 447 Pfam Regulator of chromosome condensation (RCC1) repeat 395 442 IPR000408 -
Pvu8g2386 447 Pfam Regulator of chromosome condensation (RCC1) repeat 289 337 IPR000408 -
Pvu8g2386 447 Pfam Regulator of chromosome condensation (RCC1) repeat 340 391 IPR000408 -
Pvu8g2386 447 Gene3D - 9 136 IPR009091 -
Pvu8g2386 447 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 275 285 IPR000408 -
Pvu8g2386 447 Gene3D - 264 447 IPR009091 -
Pvu8g2386 447 Pfam Regulator of chromosome condensation (RCC1) repeat 103 127 - -
Pvu8g2386 447 Pfam Regulator of chromosome condensation (RCC1) repeat 222 247 - -
Pvu8g2386 447 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 249 447 - -
Pvu8g2386 447 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 247 - -
Pvu8g2386 447 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 340 IPR000408 -
Pvu8g2386 447 PRINTS Chromosome condensation regulator RCC1 signature 103 116 IPR000408 -
Pvu8g2386 447 PRINTS Chromosome condensation regulator RCC1 signature 122 138 IPR000408 -
Pvu8g2386 447 PRINTS Chromosome condensation regulator RCC1 signature 225 241 IPR000408 -
Pvu8g2386 447 PRINTS Chromosome condensation regulator RCC1 signature 330 348 IPR000408 -
Pvu8g2386 447 PRINTS Chromosome condensation regulator RCC1 signature 390 411 IPR000408 -
Pvu8g2386 447 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 239 288 IPR000408 -
Pvu8g2386 447 SUPERFAMILY RCC1/BLIP-II 19 445 IPR009091 -
Pvu8g2386 447 Gene3D - 196 263 IPR009091 -
Pvu8g2386 447 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 445 IPR000408 -
Pvu8g2386 447 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 15 247 - -
Pvu8g2386 447 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 249 447 - -
Pvu8g2386 447 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 381 391 IPR000408 -
Pvu8g2386 447 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 225 235 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2386 Pvu-Chr8 54525740 54531173 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2386 - - gmx:100807837 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2445 1 49687849 49694764 Pvu8g2386 8 54525740 54531173 ECH
Pvu8g2386 8 54525740 54531173 Pvu8g2386 8 54525740 54531173 ECH
Pvu1g2445 1 49687849 49694764 Pvu8g2386 8 54525740 54531173 PCT