Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2445 ATGAATGGCGAGGGGAGTGAAGCAATGCAAGTGGAGAAGGAGAGGTTGGTGTTCATGTGGGGTTACCTCCCCGGAGCTCTGCCGCAGAGGACGCCTCTGCTCACGCCGGTCCTCGTTAGGGTTCCGCCGTCAGTTTACTCTTGGGGAGATGTTTGCGGCGGCGGCTGTGGATTCGCCATGGCTATCTCTGAGCTCGGAAAGCTCATAACATGGGGTTCATCAGATGATTCAGGCCAAAGCTATGTTACATCTGGCAAACATGGGGAAATTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCATCTGGATGGGCGCATTGTGTTGCTGTGACTGATTGTGGAGAAGTTTACACATGGGGATGGAGGGAATGTGTTCCCTCTGGGAAGGTGTTTGGTGAATCATTAACTGGGGTAAACCCTGAAAAGGACGTACCGGGAAGGCAAAGCTCATTCCTGACGGAGCAAGTAAGCCCTCATTCTCAAGGCTCAAAATCTACTGGAGGAACTGCTTCTAGTACCAGTGGAGAAGAAAGTACAAAGAGAAGAAGAGTGTCTTCAGCAAAACAAACAGCTGAAACCTCATCTTCCAGTGATGATACTACAGCGTTGCCATGTCTTGTCACACTAAACCCAGGCGTAAGGATAGCAAGTGTTGCTGCTGGTGGTCGCCATACCTTAGCACTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATACCTCCTCTTATGGTAAAGATATGTCGTTGTCACTGGCTCGAGGAAGCATGAGTTCAGATGGACAAAATTTCAGAGTTCTAGGAAGTTATATAAAGGTAATTGCCTGCGGAGGTCGACACAGTGCAGTAATAACAGATGCTGGAGTTGTGCTTACATTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGTCCGACTTGTGTATCTTCCTTATTGGGTATTCAAATAGAGGGGGTTGCCGCAGGACTGTGGCATACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGTTGGGAACTGGCGCTGATCAAGCTGAGACTGTACCAAGGCTCCTGGATTGTCCGAGCTTGGAAAATGTCAACGTTAAGAAGATATCTTGTGGGGCTCGCCACAGTGCTCTAATAACAGATAAGGGAAGAGTCTTTTGCTGGGGATGGAACAAGTATGGACAGTTGGGCCTTGGTGACGTGATTGATCGTAACATTCCTTCTGAAGTCACCATCCAAGGTTGCGTAGCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTTGCCGAGTCCCCCACTTGA 1428 0.4853 MNGEGSEAMQVEKERLVFMWGYLPGALPQRTPLLTPVLVRVPPSVYSWGDVCGGGCGFAMAISELGKLITWGSSDDSGQSYVTSGKHGEIPEPFPLPTEVTIVKAASGWAHCVAVTDCGEVYTWGWRECVPSGKVFGESLTGVNPEKDVPGRQSSFLTEQVSPHSQGSKSTGGTASSTSGEESTKRRRVSSAKQTAETSSSSDDTTALPCLVTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINTSSYGKDMSLSLARGSMSSDGQNFRVLGSYIKVIACGGRHSAVITDAGVVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETVPRLLDCPSLENVNVKKISCGARHSALITDKGRVFCWGWNKYGQLGLGDVIDRNIPSEVTIQGCVAKNVACGWWHTLLLAESPT* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2445 475 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 368 IPR000408 -
Pvu1g2445 475 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 475 - -
Pvu1g2445 475 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 10 475 - -
Pvu1g2445 475 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 423 473 IPR000408 -
Pvu1g2445 475 Pfam Regulator of chromosome condensation (RCC1) repeat 317 364 IPR000408 -
Pvu1g2445 475 Pfam Regulator of chromosome condensation (RCC1) repeat 422 470 IPR000408 -
Pvu1g2445 475 Pfam Regulator of chromosome condensation (RCC1) repeat 368 419 IPR000408 -
Pvu1g2445 475 PRINTS Chromosome condensation regulator RCC1 signature 220 233 IPR000408 -
Pvu1g2445 475 PRINTS Chromosome condensation regulator RCC1 signature 239 255 IPR000408 -
Pvu1g2445 475 PRINTS Chromosome condensation regulator RCC1 signature 355 371 IPR000408 -
Pvu1g2445 475 PRINTS Chromosome condensation regulator RCC1 signature 371 385 IPR000408 -
Pvu1g2445 475 PRINTS Chromosome condensation regulator RCC1 signature 463 475 IPR000408 -
Pvu1g2445 475 MobiDBLite consensus disorder prediction 141 205 - -
Pvu1g2445 475 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 409 419 IPR000408 -
Pvu1g2445 475 MobiDBLite consensus disorder prediction 151 180 - -
Pvu1g2445 475 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 316 IPR000408 -
Pvu1g2445 475 Gene3D - 9 137 IPR009091 -
Pvu1g2445 475 Gene3D - 401 475 IPR009091 -
Pvu1g2445 475 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 223 233 IPR000408 -
Pvu1g2445 475 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 422 IPR000408 -
Pvu1g2445 475 Pfam Regulator of chromosome condensation (RCC1) repeat 220 249 - -
Pvu1g2445 475 Gene3D - 139 400 IPR009091 -
Pvu1g2445 475 SUPERFAMILY RCC1/BLIP-II 38 473 IPR009091 -
Pvu1g2445 475 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 303 313 IPR000408 -
Pvu1g2445 475 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2445 Pvu-Chr1 49687849 49694764 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2445 - - gmx:100778841 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2445 1 49687849 49694764 Pvu1g2445 1 49687849 49694764 ECH
Pvu1g2445 1 49687849 49694764 Pvu8g2386 8 54525740 54531173 ECH
Pvu1g2445 1 49687849 49694764 Pvu8g2386 8 54525740 54531173 PCT