Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2343 ATGGCAACTGCTACTAAGTTGTCGGACGTGGTGCTGGACTGTGTGATGCCGTACATCCACGACCCCAAGGACCGGGACGCGGTGTCGCAGGTGTGTCACCGGTGGTACGAGCTCGACTCGCTCACGCGGAAGCACGTTACGATTGCGCTCTGCTACACCACCACACCGGACCGCCTCCGGAGGCGGTTCCCGCACCTAGAGTCCCTGAACCTGAAGGGGAAGCCCCGGGCAGCAATGTTCAACCTCATACCAGAGGATTGGGGAGGTTTCGTTACACCGTGGGTTAAAGAGATCTCTCAGTACTTTGATTGCTTGAAGTCACTTCACTTTCGCCGCATGATTGTGACGGATTCCGATCTTCAGGTTCTCGCTTGCTCACGCGGTCACGTACTTCAGGCGCTCAAGCTCGATAAGTGCTCCGGATTCTCCACCAATGGCCTTTATTTTATTGGTCGCTTTTGCAGGAATTTGAGAATCTTGTTTTTAGAGGAAAGCTCGCTTGTTGATGATGATGGTGACTGGCTCCATCAGCTTGCTTTGAATAATACAGTTCTAGAGACACTAAATTTTTACTTGACTGATATTGCCAATGTCAGAATCCAGGACCTTGAACTTATAGCCAGAAATTGCCCCAACTTAAGCTCAGTGAAAATTACTGATTGTGAAGTATTGGATTTGGTGAACTTCTTTCGACATGCATCTGCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAATCAGAGAAGTACGCTGCTATATCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTCATGCAGCCTTACTGAAAAAATTGGATCTTTTGTATGCAATGCTGGATACAGAGGACCACTGTACGTTAATCCAAAGGTGCCCTAACTTGGAAGTACTTGAGTCAAGGAACGTAATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAAGCTTAAAAGGCTTCGGATTGAAAGAGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTGTGGTTTCACAAAGAGGACTAATTGCTTTGTCACATGGCTGTCCAGAGCTTGAATATTTGGCCGTTTATGTATCCGACATTTCAAATGCATCTTTAGAACACATTGGTACTCACTTGAAAAAACTTTGTGATTTTCGCCTTGTCTTGCTAGACCGTGAAGAGAAAATAACTGATTTGCCACTTGACGACGGAGTGAGGGCTTTACTGAGGGGTTGTGATAAGCTCAGAAGATTTGCTCTGTATCTGAGACCTGGGGGCTTGACCGATGTGGGATTGGGTTACATAGGACAATACAGCCCCAACGTGAGATGGATGCTTCTAGGGTATGTAGGAGAGACTGATGAAGGGCTTTTGAAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAGTTGGAAATGAGGGGATGTTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCTGCAACTCAACTAACTTCTCTGAGGTACCTATGGGTTCAAGGGTATGGAGCATCTCCTTCTGGGCGTGATCTTTTGGCAATGGCTCGCCCCTATTGGAACATTGAGTTGATTCCTTCTAGACGCGTCTTTGTTAATAATCAACAGGAAGAGCCTGTAGTTGTTGAGCATCCGGCTCATATTCTTGCATATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGATACTGTTATACCTTTGGATACTGCAACATATGTTGACACGTAA 1758 0.4585 MATATKLSDVVLDCVMPYIHDPKDRDAVSQVCHRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLNLKGKPRAAMFNLIPEDWGGFVTPWVKEISQYFDCLKSLHFRRMIVTDSDLQVLACSRGHVLQALKLDKCSGFSTNGLYFIGRFCRNLRILFLEESSLVDDDGDWLHQLALNNTVLETLNFYLTDIANVRIQDLELIARNCPNLSSVKITDCEVLDLVNFFRHASALEEFCGGSYNEESEKYAAISLPAKLSRLGLTYITKNEMPIVFPHAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRKLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDISNASLEHIGTHLKKLCDFRLVLLDREEKITDLPLDDGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDEGLLKFSKGCPSLQKLEMRGCSFFSEYALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVFVNNQQEEPVVVEHPAHILAYYSLAGPRTDFPDTVIPLDTATYVDT* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2343 585 Pfam Transport inhibitor response 1 protein domain 64 110 IPR041101 -
Pvu8g2343 585 SUPERFAMILY RNI-like 104 519 - -
Pvu8g2343 585 SMART LRR_CC_2 305 328 IPR006553 -
Pvu8g2343 585 SMART LRR_CC_2 365 389 IPR006553 -
Pvu8g2343 585 SMART LRR_CC_2 154 181 IPR006553 -
Pvu8g2343 585 SMART LRR_CC_2 210 229 IPR006553 -
Pvu8g2343 585 SMART LRR_CC_2 423 449 IPR006553 -
Pvu8g2343 585 SMART LRR_CC_2 475 499 IPR006553 -
Pvu8g2343 585 SMART LRR_CC_2 128 153 IPR006553 -
Pvu8g2343 585 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 6 580 - -
Pvu8g2343 585 Gene3D Ribonuclease Inhibitor 44 581 IPR032675 -
Pvu8g2343 585 Gene3D - 1 43 - -
Pvu8g2343 585 Pfam F-box 5 45 IPR041567 -
Pvu8g2343 585 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 6 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2343 Pvu-Chr8 54009871 54015105 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2343 K13463 - gmx:100793081 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2343 8 54009871 54015105 Pvu8g2343 8 54009871 54015105 ECH
Pvu1g2486 1 50026833 50031313 Pvu8g2343 8 54009871 54015105 PCT