Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2486 ATGACGGAGGACCGGAACGTGCGAAAAACACGTGTGGTTGACGTCGTCCTCGACTGCGTCATACCCTACATCGACGACCCTAAGGACCGCGACGCCGTTTCGCAGGTCTGTCGACGCTGGTATGAGCTCGACTCCCTCACCCGGAAGCACGTCACCATCGCCCTCTGCTACACCACCACGCCGGCGCGCCTCCGCCGCCGCTTCCCGCACCTGGAGTCGCTTAAACTGAAGGGGAAGCCCCGCGCCGCAATGTTCAACCTGATTCCCGAGGATTGGGGAGGCCACGTCACCCCCTGGGTTAAGGAAATCTCTCAGTACTTCGATTGCCTGAAGAGCCTCCACTTCCGCCGCATGATTGTCACCGATTCCGATCTTCAGCTCCTCGCCCGCTCCCGAGGTCACGTGCTGCACGCTCTCAAGCTTGACAAGTGCTCCGGTTTCTCTACCGATGGACTTCTCCATATTGGTCGCCTTTGCAAGAATTTAAGAGTGTTGTTTCTGGAGGAAAGCTCAATTGTTGAAAACGACGGAGAATGGCTACACCAGCTTGCTTTGAATAATACAGTTCTTGAGGATCTCAATTTTTACTTGACAGACATTGCTTTTATAAGGAATCAGGACCTTGAACTTCTGGCTAAAAATTGCCCCAATTTAGTGTCAGTGAAACTTACTGATTGTGAAATACTGGATCTTGTGAGCTTCTTTAGGCATGCCTCTGCTCTGGAAGAGTTTTGCGGAGGCACCTACAACGAGGAACCAGAAAATTACTCTGCTATATCATTGCCACCAAAGTTATGTCGATTGGGTTTAACATACATTGGAAAGAATGAGTTGCCCATAGTGTTCCTGTTTGCAGGCGTACTAAAAAAATTGGATCTTCTCTATGCAATGCTCGACACGGAGGATCATTGTATCTTATTCCGAAAGTGCCCAAATCTGGAAGTCCTTGAGACGAGGAATGTAATTGGCGATAGAGGGTTAGAAGTTCTTGGTCAGTGTTGTAAGAGGCTAAAAAGGCTTAGGATTGAAAGGGGTGATGATGATCAAGGAATGGAAGATGAAGAAGGTACTGTGTCCCATAGAGGGCTAATAGCCTTGTCACAGGGCTGTTCAGAGCTTGAATACTTGGCTGTTTACGTGTCAGATATTACAAATGCATCTCTGGAACATATAGGAACTCACTTGAAAAAACTATGCGATTTTCGCCTAGTGTTACTTGATCATGAAAAGAAAATAAGTGATTTGCCACTTGACAACGGAGTGAGGGCTCTTCTGAGGGGCTGTGAGAATCTTAGAAGATTTGCTCTATATCTGAGGCGTGGGGGGGTGACTGATGTAGGTCTTGGTTACATAGGGCAGTACAGTTCAAATGTTAGATGGATGCTGCTGGGTTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAATTCTCAAAGGGGTGTCCTAGTCTTCAGAAACTTGAGATGAGAGGGTGTTCTTTTTTCAGTGAGCGTGCACTTGCTGTGGCTGCAACAAGATTAACTTCTCTAAGGTACTTGTGGGTGCAAGGATATGGAGCATCTCCATCTGGGCGTGATCTTTTGGCAATGGCTCGCCCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAGGTGCCTATGAATAACCATCAGGATGAGACTGTAGTTGTAGAGCATCCAGCTCATATTCTTGCATATTATTCTCTTGCAGGCCAGAGATCAGATTTTCCAGATACTGTTGTGCCTTTGGACACTGCCACGTGTGCTGTTGATGCCTAG 1776 0.4764 MTEDRNVRKTRVVDVVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVKEISQYFDCLKSLHFRRMIVTDSDLQLLARSRGHVLHALKLDKCSGFSTDGLLHIGRLCKNLRVLFLEESSIVENDGEWLHQLALNNTVLEDLNFYLTDIAFIRNQDLELLAKNCPNLVSVKLTDCEILDLVSFFRHASALEEFCGGTYNEEPENYSAISLPPKLCRLGLTYIGKNELPIVFLFAGVLKKLDLLYAMLDTEDHCILFRKCPNLEVLETRNVIGDRGLEVLGQCCKRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYLAVYVSDITNASLEHIGTHLKKLCDFRLVLLDHEKKISDLPLDNGVRALLRGCENLRRFALYLRRGGVTDVGLGYIGQYSSNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSERALAVAATRLTSLRYLWVQGYGASPSGRDLLAMARPFWNIELIPSRKVPMNNHQDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLDTATCAVDA* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2486 591 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Pvu1g2486 591 Gene3D - 2 48 - -
Pvu1g2486 591 Gene3D Ribonuclease Inhibitor 49 586 IPR032675 -
Pvu1g2486 591 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 10 585 - -
Pvu1g2486 591 SMART LRR_CC_2 480 505 IPR006553 -
Pvu1g2486 591 SMART LRR_CC_2 107 131 IPR006553 -
Pvu1g2486 591 SMART LRR_CC_2 428 454 IPR006553 -
Pvu1g2486 591 SMART LRR_CC_2 133 158 IPR006553 -
Pvu1g2486 591 SMART LRR_CC_2 370 394 IPR006553 -
Pvu1g2486 591 SMART LRR_CC_2 215 234 IPR006553 -
Pvu1g2486 591 Pfam F-box 10 50 IPR041567 -
Pvu1g2486 591 SUPERFAMILY RNI-like 87 517 - -
Pvu1g2486 591 SUPERFAMILY Outer arm dynein light chain 1 213 316 - -
Pvu1g2486 591 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 10 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2486 Pvu-Chr1 50026833 50031313 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2486 K13463 - gmx:732662 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2486 1 50026833 50031313 Pvu1g2486 1 50026833 50031313 ECH
Pvu1g2486 1 50026833 50031313 Pvu8g2343 8 54009871 54015105 PCT