Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2297 ATGCCAATAACAATGACAAGCACTGAAGAACCCTCTCTTCAACACTCAACCAACGGCGATGCGGAACCTAACCACCACCACGATATTGAAGATGATGAAGAAGAAGAAGATGATGACCAATACGACGAGGACGACGACGTCGTTCAGCAACCGAATCGCGGAATTCCCCAATCGGCAGCGACCAAGCTGCGCGAGCAGCGTTTCAAGGTGGAAACCCTATCGCGGCGGTTGTCGTCGGAGCTGGTTCCGATCCGAGTGCACGACGTGGTCATAAACGGCAACACTAAGACCAAGGATTGGGTAATTCAAGCGGAGCTCAGAGGCGTAGAGAACGCCACCAGCATGCAGGAGCTTATGCAAGTTTCGCAAATCGCCATTGCCAGGCTTCAGGAACTCCAAACCTTCGATTCCTGCATGTTTCGCCTCGAGGCTGGGCCGCGAGAACTCCCAAACACTGTCAATGTCATTGTCGACGTTGTTGAAACCGGTAACAAAGTTTCAGCCAAATTCAACGTTTATAACAAACCCTCGACTAGTTCTTGGACTGCTGAAGGTGCTCTTAAGTATAAGAACTTTTTGGGCTATGGTGATCTATGGGATGCTTCTTTGGCCTATGGGGCCAACCAAGGGACTGAGGTGAGTGCCGGGGTGCATGCCCCTCGAGTTAGAGGGTTTTTAACTCCTATTGTGGCACGGCTATCCATGCTTTCCCAAGATTGGCAAGAGGCTTCCTCGTACAAAGATCAGTTACTGGGTGCTTCTCTTGGCTTGATCTCGACGGAGCACCATGACTTAGCATACACTCTTGGATGGCGTACCTTATCAGATCCATCACAGATGTCATCCAGGTCTATAAGAAGGCAGCTTGGTCATGGTTTAGTGTCTTCTTTGAAGTATACATTTAAAATTGATAGGAGAAATTCTCCTATCAGACCAACAAAAGGATATGCTTTTCTTTCCTCCACACATGTTGGTGGCCTTACTCCAGATCCCAGGAGCTTGCGGTTTCTGCGCCAGGAGTTTGATGTTCGCTTTGCCGTCCCTTTTGGGTTTTACAATACAGCTCTAAACCTTGGGATATCTGCTGGTGCTGTTTTTCCATGGGGTCATGGATTCAAAACCAAGCCATCTCCCCTTCCAGAAAGGTTTTATTTGGGCGGTGATTTTTCTCCAGTTTGCACCCTAGGAGGGCCAACAACCTTATGGGGATTTAAAACTAGAGGATTAGGTCCTAGTGAACCTCGGAGGGTAAATAGAGATGGATCTGATGATGACAACGTTGATTCCTCTGGATGGGACTTCATTGGCGGAGATCTTGCTGTTACTGCTTTTGCTGATCTCTCTTTTGATCTTCCAATTAGGTGGTTGAGAGAACATGGAATACATGGTCATGTTTTTGCTGGTTCTGGGAATGCTGCGAAATTATCTCAGAATGAATACAGGCACTTCTCTCCTCGGAAGTTCTTGGAATCCTTTCGAATGTCTGTGGGATGTGGATTTGTTATTCCTACTAGACTCTTCCGCCTAGAGGGTAACTACTTTTACATACTCAGAAAGGGTGAGCAAGATCGTGGGAAGACTGGATTTAGGTTTAGTTTTTCAGCTCCTTGGTAG 1614 0.4734 MPITMTSTEEPSLQHSTNGDAEPNHHHDIEDDEEEEDDDQYDEDDDVVQQPNRGIPQSAATKLREQRFKVETLSRRLSSELVPIRVHDVVINGNTKTKDWVIQAELRGVENATSMQELMQVSQIAIARLQELQTFDSCMFRLEAGPRELPNTVNVIVDVVETGNKVSAKFNVYNKPSTSSWTAEGALKYKNFLGYGDLWDASLAYGANQGTEVSAGVHAPRVRGFLTPIVARLSMLSQDWQEASSYKDQLLGASLGLISTEHHDLAYTLGWRTLSDPSQMSSRSIRRQLGHGLVSSLKYTFKIDRRNSPIRPTKGYAFLSSTHVGGLTPDPRSLRFLRQEFDVRFAVPFGFYNTALNLGISAGAVFPWGHGFKTKPSPLPERFYLGGDFSPVCTLGGPTTLWGFKTRGLGPSEPRRVNRDGSDDDNVDSSGWDFIGGDLAVTAFADLSFDLPIRWLREHGIHGHVFAGSGNAAKLSQNEYRHFSPRKFLESFRMSVGCGFVIPTRLFRLEGNYFYILRKGEQDRGKTGFRFSFSAPW* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2297 537 MobiDBLite consensus disorder prediction 1 19 - -
Pvu8g2297 537 Pfam Omp85 superfamily domain 191 534 IPR000184 GO:0019867
Pvu8g2297 537 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 10 535 IPR039910 -
Pvu8g2297 537 MobiDBLite consensus disorder prediction 29 45 - -
Pvu8g2297 537 Gene3D membrane protein fhac 83 162 - -
Pvu8g2297 537 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 174 536 - -
Pvu8g2297 537 MobiDBLite consensus disorder prediction 1 60 - -
Pvu8g2297 537 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 10 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2297 Pvu-Chr8 53438585 53443744 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2297 K07277 - gmx:100802876 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2297 8 53438585 53443744 Pvu8g2297 8 53438585 53443744 ECH
Pvu1g2533 1 50435188 50439843 Pvu8g2297 8 53438585 53443744 PCT