Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2533 ATGGAAAACTCGGAGGAAAGAAACGAACAACTTCCCTTCTCTCCAAACCCTAACAGTGCCGAAGACGAAGAAATCGACGAACAGGAGGACGAAGAGGAAGAGGAAGAAGACGACAGCCATGACGACGTCGTTTCGCACGAGCCGTACAATCGGAACAACCGATCCTCATTGTCGAGTTTGCGCGAGCAGCGTTCGAAGCTGGAAACCCTCTCCCGGCGTTTGGCTTCGGAGCTGGTCCCTATCCGCGTCCACGATGTGCTGATTCGCGGCAACACCAAGACCAAGGATTGGGTGATTGAGGCGGAGCTCAAGCTTCTCCAGGACGCCGCCACCGTGCAGGAGCTCATTAGCGCCTCCGAAATCGCCCTCGCCAGGCTCCGCAGCCTTGAGATTTTCGAGTCCACCGAACTCACTCTCCAGGCCGGGCCGCCGGAGCTGCCTCACACCGCCAATGTCGTCGTCGATGTCGTCGAGACCGCCAACAAAGTCTCTGGCGAATTCGGCGTTTACACCAAACCCTCGACAAGTTCGTGGACTGCTGAAGGGGGTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCCTCTTTGGCTTATGGTGGCAGCCAAGCAACAGAGGTGAGTGTAGGAGTGTTTGCTCCAAGACTGAAAGGGTTGTTAACTCCTCTTGTAGCACGACTTTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAACAGTTGTTAGGATTGTCTCTTGGCTTAATCTCAACCAGGCACCATGACTTAGTCTACACTCTTGGATGGCGTACCTTGACTGATCCATTACAAATGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTATTATCATCTTTGAAGTATACATTTAAAATTGACAGGAGAAACTCACCAATTAGGCCTACAAAGGGATATGCTTTTCTTTCCACTACTCACTTTGGTGGTCTTACACCAGATCATCGGAGCTTGCGATTTCTACGCCAGGAATTTGATGTTCGCTGTGCCATCCCCTTTGGATTTTATAATACAGCTCTTAACCTTGGGATTTCAGCTGGTGCCGTTTTTCCATGGGGGCATGACTTCATGAACAAGCCATCTCCTCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTAGGAGGGCCAATAACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCTACTGAACCACGAAGGAGAGTTAGAGATGAAATTATTGATGACAATGATGATTCCTCTAAATGGGACTTCATTGGAGGAGATGTTGCTGTTACGGCATTTGCAGACCTGTCTTTTGATCTCCCGGTTAGGTGGTTGAGAAATCATGGAATCCATGGTCATCTTTTTGCTGGTGCTGGAAATACTGCAAAATTGACTCAGAATGAATATAAGCGATTTTCACCTCGGAAGTTCTTAGAATCATTTCGAACTTCAGTTGGATGTGGATTTGTTGTTCCTACTAAACTTTTTCGCCTAGAGGGTAACTTCTACTACGTACTCAAGCAGAATGAACATGATCGTGGGAAGACAGGATTTCGGTTCAGCTTCTCAGCTCCTTCTTAG 1605 0.4773 MENSEERNEQLPFSPNPNSAEDEEIDEQEDEEEEEEDDSHDDVVSHEPYNRNNRSSLSSLREQRSKLETLSRRLASELVPIRVHDVLIRGNTKTKDWVIEAELKLLQDAATVQELISASEIALARLRSLEIFESTELTLQAGPPELPHTANVVVDVVETANKVSGEFGVYTKPSTSSWTAEGGLKYKNLLGYGDLWDASLAYGGSQATEVSVGVFAPRLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISTRHHDLVYTLGWRTLTDPLQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGYAFLSTTHFGGLTPDHRSLRFLRQEFDVRCAIPFGFYNTALNLGISAGAVFPWGHDFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPRRRVRDEIIDDNDDSSKWDFIGGDVAVTAFADLSFDLPVRWLRNHGIHGHLFAGAGNTAKLTQNEYKRFSPRKFLESFRTSVGCGFVVPTKLFRLEGNFYYVLKQNEHDRGKTGFRFSFSAPS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2533 534 Coils Coil 57 77 - -
Pvu1g2533 534 Pfam Omp85 superfamily domain 188 531 IPR000184 GO:0019867
Pvu1g2533 534 Gene3D membrane protein fhac 80 159 - -
Pvu1g2533 534 MobiDBLite consensus disorder prediction 20 41 - -
Pvu1g2533 534 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 18 532 - -
Pvu1g2533 534 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 18 532 IPR039910 -
Pvu1g2533 534 Coils Coil 18 38 - -
Pvu1g2533 534 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 170 532 - -
Pvu1g2533 534 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2533 Pvu-Chr1 50435188 50439843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2533 K07277 - gmx:100785408 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2533 1 50435188 50439843 Pvu1g2533 1 50435188 50439843 ECH
Pvu1g2533 1 50435188 50439843 Pvu8g2297 8 53438585 53443744 PCT