Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2270 ATGGGAGATCATTTGGCTAGGGCCCAGGATTTCGAGGGCAAGGCAGAGAAGAAGCTCAGCGGTTGGGGTTTGTTTGGCTCCAAATTCGAGGACGCCGCTGATCTCTTCGACAAATCCGCCAATTCCTTCAAGCTCGCCAAATCATGGGACAAAGCAGGATCCACCTACATCAAATTGGCGAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCCAAGCTTATGTTGACGCTGCGCATTGCTATAAAAAATCTAACATAAATGAGGCTGTATCTTGCTTAGACAATGCTGTAAATATTTTTTGTGAGATTGGAAGACTCTCTATGGCAGCTAGATATTTGAAGGAAATTGCTGAGTTGTATGAGTCTGAACAAAATATCGAACAAGCAGTAGTTTACTTTGAAAAAGCGGCTGATTTTTATGAAAATGAAGATGTGAACACTTCTGCAAACCAGTGCAAGCAAAAAGTTGCTCAATACAATGCCCAGCTAGAACAATATCAGAGGTCAATTGAGATTTATGAAGAGATTGCTCGCCAGTCTCTAAACAATAATTTACTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTCTGTAGAGGGGATGTTATAGCTATTAGCAATGCATTGGAGCGATATCAGGATTTAGATCCAACATTTTCAGGAACACGAGAATATAGACTACTTGCAGATATTGCTGCTGCAATTGATGAAGAAGATGTTGGGAAGTTTACTGAAGTTATAAAAGAATTTGATAGTATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAGGAGAAACTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.4046 MGDHLARAQDFEGKAEKKLSGWGLFGSKFEDAADLFDKSANSFKLAKSWDKAGSTYIKLANCHLKLESKHEAAQAYVDAAHCYKKSNINEAVSCLDNAVNIFCEIGRLSMAARYLKEIAELYESEQNIEQAVVYFEKAADFYENEDVNTSANQCKQKVAQYNAQLEQYQRSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCRGDVIAISNALERYQDLDPTFSGTREYRLLADIAAAIDEEDVGKFTEVIKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2270 289 CDD SNAP 7 278 IPR000744 GO:0006886
Pvu8g2270 289 SUPERFAMILY TPR-like 7 280 IPR011990 GO:0005515
Pvu8g2270 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Pvu8g2270 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Pvu8g2270 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Pvu8g2270 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Pvu8g2270 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Pvu8g2270 289 ProSiteProfiles TPR repeat profile. 112 145 IPR019734 GO:0005515
Pvu8g2270 289 Coils Coil 151 185 - -
Pvu8g2270 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Pvu8g2270 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Pvu8g2270 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Pvu8g2270 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Pvu8g2270 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Pvu8g2270 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Pvu8g2270 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2270 Pvu-Chr8 53220964 53223832 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2270 K15296 - gmx:100794564 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2562 1 50646202 50649977 Pvu8g2270 8 53220964 53223832 ECH
Pvu8g2270 8 53220964 53223832 Pvu8g2270 8 53220964 53223832 ECH
Pvu1g2562 1 50646202 50649977 Pvu8g2270 8 53220964 53223832 PCT