Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2562 ATGGCCGATCAGCTGTCGAAGGCTGAAGAATTCGAGAAGAAAGCTGAGAAGAAGCTCGCTGGCTGGGGCTTGTTTGGCTCCAAGTACGAGGATGCCGCCGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTCGCCAAATCATGGGACAGAGCTGGAGCGACATACCTAAAGTTGGCAAATTGCCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCCCAAGTTGATGCCGCACATTGCTACAAGAAAACTAATATAAATGAGGCTGTATCTTGCTTAGACCGTGCTGTAAACATTTTCTGTGACATTGGAAGACTCTCTATGGCTGCTAGATATTTAAAGGAAATTGCTGAATTGTATGAGTCTGAACAGAATATTGATCAGGCTCTTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAGGTGACGACTACTGCTAACCAATGCAAACAAAAAGTTGCTCAATTTGCTGCTCAGTTAGAACAGTATCAAAAGTCAATTGAGATTTACGAAGAGATAGCTCGTCAATCCCTCAACAGTAATTTATTGAAGTACGGTGTTAAAGGGCACCTGCTGAATGCTGGCATCTGCCAACTCTGTAAAGGGGACGTTGTTGCTATAACCAATGCATTAGAACGATATCAGGAATTAGATCCTACATTTTCGGGAACACGTGAATGCAGATTGTTGGCGGATATTGCTGCTGCTATTGATGAAGAAGATGTTGGGAAGTTTACTGATGTTGTGAAGGAATTTGATAGCATGACCCCACTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCGAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.4253 MADQLSKAEEFEKKAEKKLAGWGLFGSKYEDAADLFDKAANSFKLAKSWDRAGATYLKLANCHLKLESKHEAAQAQVDAAHCYKKTNINEAVSCLDRAVNIFCDIGRLSMAARYLKEIAELYESEQNIDQALVYYEKSADFFQNEEVTTTANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNSNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTRECRLLADIAAAIDEEDVGKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2562 289 Coils Coil 151 178 - -
Pvu1g2562 289 CDD SNAP 23 278 IPR000744 GO:0006886
Pvu1g2562 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Pvu1g2562 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Pvu1g2562 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Pvu1g2562 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Pvu1g2562 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Pvu1g2562 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Pvu1g2562 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Pvu1g2562 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Pvu1g2562 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Pvu1g2562 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Pvu1g2562 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2562 Pvu-Chr1 50646202 50649977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2562 K15296 - gmx:100814639 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2562 1 50646202 50649977 Pvu8g2270 8 53220964 53223832 ECH
Pvu1g2562 1 50646202 50649977 Pvu1g2562 1 50646202 50649977 ECH
Pvu1g2562 1 50646202 50649977 Pvu8g2270 8 53220964 53223832 PCT