Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2208 ATGCACCGCCTCACCGTCTCCACCGTTCTCCTCTCCCTAACACTTCTCACCCTCGCAGATGGAGGTTCCATTGGAGTTAACTACGGTCGCATAGCAAACAACCTTCCCTCCGCCGTGAAGGTCGTTCAGCTCCTCAAGTCCCAGGGGCTGAACCGGGTCAAGGTCTACGACACCGACCCGGCAGTGCTTCGGGCCTTATCCGGATCCGGAATCAAAGTGACGGTTGATCTTCCAAACATGCAACTCTTTGCAGCAGCCAAAGCACCCTCCTTTGCGTCCTCCTGGGTCGAAAGAAACGTCGTCGCTTACTACCCTCACACTCAAATCGAAGCCATTGCGGTTGGAAACGAGGTTTTCGTAGACACACACAACACAACCAAGTTCCTTGTACCCGCCATGAAAAACATTCACAAAGCGCTTGTGAAACACAACCTCGACTCCGACATTAAGGTTTCCTCCCCCATTGCCCTCTCTGCGTTGGCGAACTCTTACCCATCCTCATCCGGATCTTTCCGACCCGATCTCGTTGAACCCGTTTTCAAACCCATGCTGGACTTCCTCCGCGAATCCGGGTCCTACTTAATGGTAAACGTGTACCCGTTCTTCGCGTACGAGTCCAACGCTGACGTCATCTCTTTAGATTATGCGCTTTTCCGAGACAACCCGGGCGTGACGGATCCGGGTAACGGGTTGAGATACTATAACCTATTTGACGCCCAAATCGACGCCGTTTTCTCCGCTTTAAGTGCTTTGAAATACGACGACGTTAAGATTGTAGTGACCGAAACAGGGTGGCCTTCTAAGGGGGATAATAATGAGGTGGGTGCGAGCGTAGAGAACGCCGCTGCGTTCAACGGTAATCTCGTCCGTAAGATCTTAACCGGTGGTGGGACCCCTCTTCGACCCAAAGCCGATCTCACCGTCTATCTGTTCGCGCTTTTTAATGAGAATCAGAAGTCCGGGCCCACTTCCGAGAGAAACTTCGGGCTTTTTTACCCTGACGAGAAAAGGGTCTACAATGTTCCGTTTACGGCGGAGGAGCTCAAGGACTACCACGACTCGCCGGTGAAAGGTGGCAGTCATAATCAGACCACCCAGGCGCCTGCACCCAATGTGAGCGGCGGCGTGTCCAAGAGCACCACCGGAAACACGTGGTGCGTTGCGAACCCGGACGCGGATAAAGTTAAGCTGCAGGCCGCTCTAGATTTTGCTTGCGGCGAAGGAGGTGCTGACTGCGCTCCGATTCAGCATGGTGCCACGTGCTACGATCCCAACACGATTGTGGCCCACGCTTCGTTTGCGTTCAATAGTTATTACCAGAAGCAAGCGCGCAAGGGCGGTAGCTGCTATTTCGGGGGTACGTCCTACGTGGTCACGCAGGAGCCTAGGTATGGTAACTGTGAGTTCCCTACTGGATACTAA 1422 0.5366 MHRLTVSTVLLSLTLLTLADGGSIGVNYGRIANNLPSAVKVVQLLKSQGLNRVKVYDTDPAVLRALSGSGIKVTVDLPNMQLFAAAKAPSFASSWVERNVVAYYPHTQIEAIAVGNEVFVDTHNTTKFLVPAMKNIHKALVKHNLDSDIKVSSPIALSALANSYPSSSGSFRPDLVEPVFKPMLDFLRESGSYLMVNVYPFFAYESNADVISLDYALFRDNPGVTDPGNGLRYYNLFDAQIDAVFSALSALKYDDVKIVVTETGWPSKGDNNEVGASVENAAAFNGNLVRKILTGGGTPLRPKADLTVYLFALFNENQKSGPTSERNFGLFYPDEKRVYNVPFTAEELKDYHDSPVKGGSHNQTTQAPAPNVSGGVSKSTTGNTWCVANPDADKVKLQAALDFACGEGGADCAPIQHGATCYDPNTIVAHASFAFNSYYQKQARKGGSCYFGGTSYVVTQEPRYGNCEFPTGY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2208 473 Pfam X8 domain 384 455 IPR012946 -
Pvu8g2208 473 Pfam Glycosyl hydrolases family 17 24 343 IPR000490 GO:0004553|GO:0005975
Pvu8g2208 473 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 466 IPR044965 GO:0004553|GO:0005975
Pvu8g2208 473 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN-RELATED 6 466 - -
Pvu8g2208 473 Gene3D - 378 469 - -
Pvu8g2208 473 SMART X8_cls 384 469 IPR012946 -
Pvu8g2208 473 MobiDBLite consensus disorder prediction 354 376 - -
Pvu8g2208 473 Gene3D Glycosidases 22 352 - -
Pvu8g2208 473 MobiDBLite consensus disorder prediction 357 376 - -
Pvu8g2208 473 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Pvu8g2208 473 ProSitePatterns Glycosyl hydrolases family 17 signature. 256 269 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2208 Pvu-Chr8 52503001 52505569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2208 20 473 Glycoside Hydrolase AT2G05790 74.398 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2208 - - gmx:100800383 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0038 6 1406616 1408098 Pvu8g2208 8 52503001 52505569 PCT