Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2066 ATGCGCCTCCGCTGCTTCACGCTGCTGTGTCTGTGTTGTTGTTGGTTTGTCTCGGGAGAGGCCGAAACTGTGTCGTGTTCCAACATAGTGCCGTTGGGGTTCCGCACCCAAAACATCTCCATAACTGAATTCGGCGGCGTCGGTGATGGCCGCACCCTCAACACCAGGGCCTTCAGAGAGGCCATATACAGGGTTCAGCACTTGCCACGTGTAGGAGGCACTCTCCTTTACGTCCCTCCCGGGGTCTACTTAACAGAACCCTTCAACCTCACCAGCCACATGACGCTCTTCCTCGCTGCCGGCGCCGTTATCATGGCCACACAGGATTCATCAAATTGGCCTTTGATTGCACCCTTGCCTTCTTATGGAAGAGGAAGGGAGCTGCCTGGAGGAAGGTATATGAGTTTCATGCATGGAGATGGAGTTCAAGATGTGGTAATCACTGGTGAAAATGGCACAATTGATGGGCAAGGAGATGCTTGGTGGAATAAGTGGAGGCAGGGATCTCTTCAGTTTACTAGACCAAACCTTGTTGAATTTGTGAATTCTAGAGATATTATTATTTCAAATGTAGTCTTCAAGAATTCTCCTTTCTGGAACATACACCCGGTTTACAGCAGCAATGTTGTTGTTAGATTTGTCACCATTTTGGCCCCACGTGATTCTCCAAATACTGATGGCATTGATCCAGATTCAAGTTCAAATGTGTGCATAGAGGATTCATACATATCTACTGGAGATGATCTTGTGGCTGTGAAGAGTGGATGGGATGAATATGGGATTGCTTATGGCCTTCCTAGCTCTAACATTACCATCAGGCGAGTAAGTGGATCATCTCCATTTGCTGGAATTGCTATTGGCAGTGAAACCTCTGGTGGGGTGGAGAATGTACTTGCTGAACACATCAACCTTTACAAAATGGGAATTGGTATCCACATTAAGACCAACAGTGGCAGGGGTGGATTTATAAAGAATATTACAGTGTCTCATGTGTATATGGAGGATGCACGGAAGGGAATAAGGATCTCAGGTGATGTTGGGGACCACCCTGATGACAAATTTGATCCGAATGCTCTCCCCATTGTGAAGGGTGTCACGATGAAGAATGTTTGGGGTGTGAAGGTTTTGCAGGCTGGCTTGATACAAGGGGTGAAAAATTCACCTTTCTCTGATATTTGCCTTTATGATATCAACCTTGGTGGAGTGACAGGACCTAGAACTCCTCCTTGGAAGTGTTCTGATGTGTCTGGATTTGCTCATCAGGTTAGCCCTTGGCCATGTTCTGAGCTTAGCAGCAACCATCAAGGATCATGTGCCAATTACTCCTGA 1329 0.4688 MRLRCFTLLCLCCCWFVSGEAETVSCSNIVPLGFRTQNISITEFGGVGDGRTLNTRAFREAIYRVQHLPRVGGTLLYVPPGVYLTEPFNLTSHMTLFLAAGAVIMATQDSSNWPLIAPLPSYGRGRELPGGRYMSFMHGDGVQDVVITGENGTIDGQGDAWWNKWRQGSLQFTRPNLVEFVNSRDIIISNVVFKNSPFWNIHPVYSSNVVVRFVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGLPSSNITIRRVSGSSPFAGIAIGSETSGGVENVLAEHINLYKMGIGIHIKTNSGRGGFIKNITVSHVYMEDARKGIRISGDVGDHPDDKFDPNALPIVKGVTMKNVWGVKVLQAGLIQGVKNSPFSDICLYDINLGGVTGPRTPPWKCSDVSGFAHQVSPWPCSELSSNHQGSCANYS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2066 442 SUPERFAMILY Pectin lyase-like 33 430 IPR011050 -
Pvu8g2066 442 SMART pbh1 294 315 IPR006626 -
Pvu8g2066 442 SMART pbh1 233 265 IPR006626 -
Pvu8g2066 442 SMART pbh1 267 288 IPR006626 -
Pvu8g2066 442 SMART pbh1 323 344 IPR006626 -
Pvu8g2066 442 SMART pbh1 206 232 IPR006626 -
Pvu8g2066 442 Gene3D - 18 419 IPR012334 -
Pvu8g2066 442 PANTHER PECTIN LYASE-RELATED 9 440 - -
Pvu8g2066 442 Pfam Glycosyl hydrolases family 28 135 416 IPR000743 GO:0004650|GO:0005975
Pvu8g2066 442 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2066 Pvu-Chr8 50847303 50852021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2066 4 432 Glycoside Hydrolase AT4G23820 70.968 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2066 - - gmx:100818820 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0303 6 12268919 12275185 Pvu8g2066 8 50847303 50852021 PCT