Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0303 ATGCTTCTCTCACCTTTTCTCACACTCACTATCCTTCTTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTCTCTGCAATCTATTCAACTCCAACATGTTCCAACATAGTGCCGTTCAAAAATCGCACCGACAGAATCTCCATAACTGACTATGGAGGTGTTGGCGACGGCCGCACTCTGAACACGAAAGCGTTCAGAGAGGCTGTGTACCGCATTGAGCACCTGAAAAGGCCCGGAGGCACGGTGCTGTACGTGCCTCAGGGAGTGTACGTGACGGAGAGCTTCAACCTCACCAGTCACATGACGCTTTATCTGGCTGCCGGTGCCGTTATCAAAGCCCAACAGGATTCAAGGAATTGGCCTTTAATTGCACCCTTACCATCTTATGGAAGAGGGAGGGAGCTCCCTGGAGGAAGGTATATCAGTTTTATCCATGGAGATGGACTTACTGATGTGGTGATCACAGGTGAGAATGGGACAATTGATGGACAAGGAGATATGTGGTGGAACATGTGGAGGAAGAGAACACTTAAATATACAAGACCAAGCCTTGTTGAATTTGTAAATTCTCAAGATATTATTATTTCAAATTTGATTTTCAAGAACTCTCCCTTCTGGAATATACATCCAGTTTATTGCAACAATGTTGTGGTTCGATATGTCACAATTTTGGCTCCTCGTGACTCTCCCAATACTGATGGAGTTGATCCAGATTCAAGTTCAAATGTGTGCATAGAAGACTCATACATATCAACAGGAGATGATCTTGTGGCAGTGAAGAGTGGATGGGATGAGTATGGTATTGCATACGGTCGCCCCAGCTCTGGCATCACCATCCGACGCCTGACCGGATCATCGCCGTTTGCCGGCATTGCAGTTGGCAGTGAAACCTCTGGTGGGGTGGAGAATGTGCTTGCTGAAAACATTAACCTCTTCAACATGGGAGTAGGCATCCACATCAAGACCAACAAAGGCAGGGGAGGGTTTATCAAGAACATCACAGTGGCTCATGTGTATGTGGAGAATGCAAGGCAGGGAATAAAGATTGCAGGTGATGTAGGAGGGCACCCAGATGAGAAGTATAATCCTGATGCTCTCCCTGTTGTGAAAGGCATCACAATTAGGAATGTTTGGGGAGTGAAGGTTAACAGAGCTGGTTTGATAAATGGACTGAAAAATTCTCCTTTCACTGATGTTTGTTTGTCTGTTATCAACTTCCATGGTATGGCAGGATCAAGGGCTCCTAATTGGAAGTGTTCTGATGTGTCTGGATTTGCTTATCAGGTTAGTCCTTGGCCATGTTCTCAGCTGCACAGCCAAGAACCAGGATCCTGTGCCATTTAG 1371 0.4551 MLLSPFLTLTILLFFSSSSSSSSSSSSSSSSSVSAIYSTPTCSNIVPFKNRTDRISITDYGGVGDGRTLNTKAFREAVYRIEHLKRPGGTVLYVPQGVYVTESFNLTSHMTLYLAAGAVIKAQQDSRNWPLIAPLPSYGRGRELPGGRYISFIHGDGLTDVVITGENGTIDGQGDMWWNMWRKRTLKYTRPSLVEFVNSQDIIISNLIFKNSPFWNIHPVYCNNVVVRYVTILAPRDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGITIRRLTGSSPFAGIAVGSETSGGVENVLAENINLFNMGVGIHIKTNKGRGGFIKNITVAHVYVENARQGIKIAGDVGGHPDEKYNPDALPVVKGITIRNVWGVKVNRAGLINGLKNSPFTDVCLSVINFHGMAGSRAPNWKCSDVSGFAYQVSPWPCSQLHSQEPGSCAI* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0303 456 Pfam Glycosyl hydrolases family 28 151 432 IPR000743 GO:0004650|GO:0005975
Pvu6g0303 456 SMART pbh1 310 331 IPR006626 -
Pvu6g0303 456 SMART pbh1 249 281 IPR006626 -
Pvu6g0303 456 SMART pbh1 283 304 IPR006626 -
Pvu6g0303 456 SMART pbh1 222 248 IPR006626 -
Pvu6g0303 456 SMART pbh1 373 393 IPR006626 -
Pvu6g0303 456 SMART pbh1 339 360 IPR006626 -
Pvu6g0303 456 Gene3D - 34 439 IPR012334 -
Pvu6g0303 456 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 35 455 - -
Pvu6g0303 456 SUPERFAMILY Pectin lyase-like 49 447 IPR011050 -
Pvu6g0303 456 PANTHER PECTIN LYASE-RELATED 35 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0303 Pvu-Chr6 12268919 12275185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0303 7 448 Glycoside Hydrolase AT4G23820 72.398 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0303 - - pvu:PHAVU_006G028800g 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0303 6 12268919 12275185 Pvu6g0303 6 12268919 12275185 ECH
Pvu6g0303 6 12268919 12275185 Pvu8g2066 8 50847303 50852021 PCT