Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1993 ATGCATACTTTCATGCACCCCTTCATTTTCATCTGCATTCTCATTTCCATCCACCTCACAGCTGGAACTCAGCTCATATTGGTGAACAACTGCAAAGAGAGTGTGTGGCCGGGAATCCTTGGCAGTCCAGCCCACCCTACTCCCAAAGACGGTGGTTTTCACCTTTGCAGCGGCGAAGAGGTGGTGTTGGATGTTCCTGAGGGATGGTCAGGCAGAATCTGGGGTAGACAAGGCTGTTGTTTTGACCCCATAACCGGCAAAGGCTCATGTGAAACAGGTGATTGTGGAGGCATTCTGAAGTGTGGAGGAATGGGTGGAGTTCCACCTGCTACCCTTGTGGAAATGACACTTGGGACCTCTCAATCAGCATTGCATTTCTACGATGTTAGTTTGGTTGATGGATTTAACCTTCCAGTGTCCATGAAGCCAGTGAGTGGTGGGGTAGGTTGTGGTGTTGCAGCTTGTGAAGCCAACTTGAACGTTTGTTGTCCTCCTGCTTTGGCCATGAAGATGCAAGGGAGGGTGGTGGGGTGCAAGAGTGCTTGTTTGGCTGCCAAATCAGATAGGTATTGTTGCACTGGGGAGTTTGCCACCCCAAAAAGTTGTAAACCTAGTGCTTTTTCTCGTCTTTTTAAGACTGTTTGCCCTCAGGCTTATAGCTACGCTTATGATGACTCAACAGGGCTTAAGATTTGCAAAGCACAGAGGTATGTCATCACATTCTGCCCCTCAAATTGA 738 0.4851 MHTFMHPFIFICILISIHLTAGTQLILVNNCKESVWPGILGSPAHPTPKDGGFHLCSGEEVVLDVPEGWSGRIWGRQGCCFDPITGKGSCETGDCGGILKCGGMGGVPPATLVEMTLGTSQSALHFYDVSLVDGFNLPVSMKPVSGGVGCGVAACEANLNVCCPPALAMKMQGRVVGCKSACLAAKSDRYCCTGEFATPKSCKPSAFSRLFKTVCPQAYSYAYDDSTGLKICKAQRYVITFCPSN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1993 245 PIRSF PR5 1 245 IPR001938 -
Pvu8g1993 245 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Pvu8g1993 245 ProSiteProfiles Thaumatin family profile. 25 243 IPR001938 -
Pvu8g1993 245 SMART tha2 25 243 IPR001938 -
Pvu8g1993 245 PANTHER OS03G0233200 PROTEIN 3 244 IPR001938 -
Pvu8g1993 245 Pfam Thaumatin family 29 243 IPR001938 -
Pvu8g1993 245 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 3 244 - -
Pvu8g1993 245 Gene3D Thaumatin 24 243 IPR037176 -
Pvu8g1993 245 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Pvu8g1993 245 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Pvu8g1993 245 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Pvu8g1993 245 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Pvu8g1993 245 CDD TLP-PA 24 242 - -
Pvu8g1993 245 SUPERFAMILY Osmotin, thaumatin-like protein 24 244 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1993 Pvu-Chr8 49871572 49873820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1993 10 245 Receptor kinase-like Gene Family AT5G38280 39.024 9.47e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1993 - - gmx:100809093 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2418 1 49516941 49517860 Pvu8g1993 8 49871572 49873820 ECH
Pvu8g1993 8 49871572 49873820 Pvu8g1993 8 49871572 49873820 ECH