Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2418 ATGCCTACTTCCTCACATTACTTCCTTCTCTTCTGCTTTCTAATCTCCATCTCCCACACAGATGGGACACAACTCATAGTGGTAAACAACTGCAAAGAAAGTGTATGGCCTGCAATTCTCGGCAATGGAGGACAGCCTTCACCTAAACATGGCGGCTTTTATCTTGGAAGTGGTGAAGAGGTTGTTGTCGAAGTTCCTGAGGGTTGGTCAGGGAGAATCTGGGGCAGACAAGGGTGTTCCTTCGACCAACAAACAGGCAAAGGTTCTTGTCAAACAGGAGATTGTGGAGGCCTATTGCAATGCAATGGCATTGGTGGAGTTCCTCCTGCAACCCTAGTAGAAATGACCCTTGGAACCTCAAAATCAGCATTGCATTTCTATGATGTTAGTTTGGCTGATGGGTTTAACCTTCCCGTCTCAATGAAGCCACTGAATGGTGGTGGTGCAGATTGTGGTGCTGCTGGGTGTGAAGCTAACTTGAACGTTTATTGCCCTTCAGCCTTGGTTGTGGAGAGGAATGGGAAGGTTGTGGGGTGCAAGAGTGCTTGTTTGGCAGCAAAATCAGATAGATATTGCTGCACTGGTGAGTTTGCTGAAAGATGCAAGCCAACTGTGTTTGCTCGTCTCTTCAAGACCGTTTGCCCTAATGCTTATAGCTATGCTTATGATGATTCAGCAGTGCTCAAGACTTGTGTGGCACCTCGCTATGTCATTACATTCTGCCCTCCACATTGA 735 0.4694 MPTSSHYFLLFCFLISISHTDGTQLIVVNNCKESVWPAILGNGGQPSPKHGGFYLGSGEEVVVEVPEGWSGRIWGRQGCSFDQQTGKGSCQTGDCGGLLQCNGIGGVPPATLVEMTLGTSKSALHFYDVSLADGFNLPVSMKPLNGGGADCGAAGCEANLNVYCPSALVVERNGKVVGCKSACLAAKSDRYCCTGEFAERCKPTVFARLFKTVCPNAYSYAYDDSAVLKTCVAPRYVITFCPPH* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2418 244 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Pvu1g2418 244 SMART tha2 25 242 IPR001938 -
Pvu1g2418 244 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Pvu1g2418 244 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Pvu1g2418 244 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Pvu1g2418 244 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Pvu1g2418 244 PANTHER OS03G0233200 PROTEIN 3 244 IPR001938 -
Pvu1g2418 244 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 3 244 - -
Pvu1g2418 244 Pfam Thaumatin family 29 242 IPR001938 -
Pvu1g2418 244 CDD TLP-PA 24 241 - -
Pvu1g2418 244 Gene3D Thaumatin 24 242 IPR037176 -
Pvu1g2418 244 SUPERFAMILY Osmotin, thaumatin-like protein 24 243 IPR037176 -
Pvu1g2418 244 ProSiteProfiles Thaumatin family profile. 25 244 IPR001938 -
Pvu1g2418 244 PIRSF PR5 2 244 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2418 Pvu-Chr1 49516941 49517860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2418 5 242 Receptor kinase-like Gene Family AT5G38280 40.244 3.13e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2418 - - gsj:114381056 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2418 1 49516941 49517860 Pvu1g2418 1 49516941 49517860 ECH
Pvu1g2418 1 49516941 49517860 Pvu8g1993 8 49871572 49873820 ECH